View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6184_low_4 (Length: 598)

Name: NF6184_low_4
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6184_low_4
NF6184_low_4
[»] chr7 (49 HSPs)
chr7 (18-579)||(6584622-6585176)
chr7 (280-455)||(34389926-34390099)
chr7 (280-454)||(41089693-41089865)
chr7 (280-455)||(35745770-35745944)
chr7 (280-443)||(33435073-33435234)
chr7 (280-440)||(47325845-47326002)
chr7 (280-431)||(3419624-3419773)
chr7 (280-431)||(25160779-25160925)
chr7 (280-440)||(38306225-38306382)
chr7 (280-454)||(3867080-3867252)
chr7 (280-440)||(10244146-10244303)
chr7 (284-440)||(37794957-37795110)
chr7 (130-280)||(42533509-42533663)
chr7 (280-454)||(8745117-8745287)
chr7 (130-277)||(34389634-34389783)
chr7 (287-440)||(5860248-5860398)
chr7 (115-280)||(47326141-47326310)
chr7 (37-276)||(16954231-16954474)
chr7 (280-376)||(16954617-16954713)
chr7 (280-360)||(42533289-42533369)
chr7 (130-280)||(3419912-3420066)
chr7 (109-280)||(3478003-3478178)
chr7 (338-440)||(44353524-44353623)
chr7 (280-354)||(44755591-44755664)
chr7 (142-254)||(9106852-9106964)
chr7 (120-241)||(1320455-1320580)
chr7 (119-206)||(25160477-25160564)
chr7 (292-378)||(3478328-3478414)
chr7 (280-378)||(6716755-6716853)
chr7 (280-353)||(1320758-1320831)
chr7 (130-282)||(8744824-8744980)
chr7 (280-369)||(38485520-38485609)
chr7 (280-376)||(16828957-16829053)
chr7 (119-206)||(10243848-10243935)
chr7 (130-276)||(33434779-33434931)
chr7 (533-588)||(34391427-34391482)
chr7 (280-433)||(46133244-46133395)
chr7 (284-378)||(24324817-24324911)
chr7 (114-280)||(37794657-37794826)
chr7 (114-280)||(38305917-38306086)
chr7 (280-378)||(47457041-47457139)
chr7 (280-377)||(13311803-13311900)
chr7 (209-244)||(6717024-6717059)
chr7 (412-446)||(36449176-36449210)
chr7 (404-446)||(48161978-48162020)
chr7 (327-360)||(25153231-25153264)
chr7 (327-360)||(27993573-27993606)
chr7 (324-360)||(9349757-9349793)
chr7 (399-439)||(23983286-23983326)
[»] chr1 (48 HSPs)
chr1 (280-455)||(27031784-27031957)
chr1 (280-441)||(46814425-46814584)
chr1 (280-446)||(24658893-24659057)
chr1 (280-451)||(7857617-7857786)
chr1 (280-446)||(24684431-24684595)
chr1 (280-440)||(24449890-24450047)
chr1 (280-440)||(30685864-30686021)
chr1 (280-440)||(46692779-46692936)
chr1 (109-231)||(52278156-52278279)
chr1 (280-440)||(41920417-41920573)
chr1 (280-440)||(5389381-5389538)
chr1 (280-440)||(31585720-31585877)
chr1 (100-230)||(16147210-16147341)
chr1 (288-440)||(5459133-5459282)
chr1 (109-244)||(7857301-7857439)
chr1 (452-588)||(7857814-7857954)
chr1 (135-282)||(30686158-30686308)
chr1 (114-280)||(31586016-31586186)
chr1 (280-378)||(9313308-9313406)
chr1 (452-588)||(46814246-46814387)
chr1 (299-360)||(6583253-6583314)
chr1 (97-254)||(46814750-46814910)
chr1 (120-281)||(10785582-10785748)
chr1 (114-206)||(46693152-46693244)
chr1 (114-253)||(24450214-24450357)
chr1 (115-245)||(27101966-27102089)
chr1 (280-369)||(4651744-4651833)
chr1 (301-377)||(17033571-17033647)
chr1 (114-206)||(20113854-20113946)
chr1 (292-352)||(34774847-34774907)
chr1 (280-353)||(20113565-20113638)
chr1 (280-376)||(19598600-19598696)
chr1 (114-206)||(24684809-24684901)
chr1 (292-360)||(40933839-40933907)
chr1 (114-206)||(41920137-41920228)
chr1 (119-245)||(9313517-9313649)
chr1 (97-254)||(24658566-24658725)
chr1 (141-239)||(19598342-19598440)
chr1 (530-588)||(27031620-27031677)
chr1 (315-361)||(27905411-27905457)
chr1 (481-581)||(24659123-24659223)
chr1 (280-446)||(27102154-27102317)
chr1 (284-369)||(42374131-42374216)
chr1 (171-254)||(27032147-27032231)
chr1 (191-254)||(38545017-38545080)
chr1 (307-377)||(38544758-38544828)
chr1 (299-360)||(32864598-32864659)
chr1 (141-229)||(17033273-17033361)
[»] chr3 (40 HSPs)
chr3 (280-446)||(23328303-23328467)
chr3 (296-455)||(45398776-45398933)
chr3 (280-455)||(40023516-40023688)
chr3 (280-454)||(19176467-19176638)
chr3 (281-440)||(2392466-2392622)
chr3 (280-443)||(9584009-9584170)
chr3 (280-440)||(34475714-34475871)
chr3 (280-440)||(20611747-20611904)
chr3 (109-282)||(37123040-37123218)
chr3 (315-446)||(43012374-43012503)
chr3 (130-277)||(40023829-40023975)
chr3 (44-280)||(47235301-47235541)
chr3 (287-431)||(45163824-45163967)
chr3 (281-359)||(2394291-2394369)
chr3 (114-279)||(25647336-25647507)
chr3 (284-359)||(14193908-14193983)
chr3 (115-280)||(20611439-20611608)
chr3 (483-588)||(45398993-45399099)
chr3 (386-451)||(21342603-21342668)
chr3 (452-586)||(23328131-23328270)
chr3 (114-206)||(45163504-45163596)
chr3 (162-280)||(14193641-14193763)
chr3 (327-440)||(17550968-17551078)
chr3 (526-588)||(40023350-40023412)
chr3 (119-253)||(34476037-34476173)
chr3 (280-360)||(25647648-25647728)
chr3 (302-360)||(14879421-14879479)
chr3 (300-440)||(31482868-31483005)
chr3 (144-244)||(1653176-1653276)
chr3 (114-206)||(19176159-19176251)
chr3 (280-377)||(14755285-14755380)
chr3 (280-353)||(30935434-30935507)
chr3 (280-377)||(37123346-37123443)
chr3 (114-206)||(2394591-2394683)
chr3 (326-377)||(33143969-33144020)
chr3 (280-378)||(47945669-47945768)
chr3 (312-432)||(1652855-1652971)
chr3 (286-320)||(47235686-47235720)
chr3 (347-440)||(47235729-47235819)
chr3 (109-154)||(4464323-4464368)
[»] chr8 (33 HSPs)
chr8 (280-446)||(15821332-15821496)
chr8 (284-454)||(36630805-36630973)
chr8 (280-440)||(34388965-34389122)
chr8 (280-440)||(32066255-32066412)
chr8 (280-433)||(9519463-9519613)
chr8 (280-440)||(37986818-37986975)
chr8 (280-440)||(24995355-24995512)
chr8 (280-440)||(31207322-31207478)
chr8 (109-244)||(10248845-10248982)
chr8 (381-455)||(38577734-38577808)
chr8 (107-245)||(17657297-17657438)
chr8 (114-206)||(34389311-34389403)
chr8 (114-206)||(36630493-36630585)
chr8 (338-440)||(20138448-20138547)
chr8 (280-378)||(10248572-10248670)
chr8 (295-428)||(16457433-16457562)
chr8 (107-254)||(15821663-15821812)
chr8 (280-377)||(30236148-30236245)
chr8 (527-588)||(38577567-38577628)
chr8 (114-280)||(37987114-37987284)
chr8 (114-206)||(32066628-32066720)
chr8 (404-455)||(35816187-35816238)
chr8 (280-353)||(10552233-10552305)
chr8 (485-587)||(35816026-35816128)
chr8 (452-588)||(15821157-15821299)
chr8 (114-242)||(24995690-24995817)
chr8 (141-254)||(30236377-30236490)
chr8 (312-369)||(35062453-35062510)
chr8 (293-369)||(12898302-12898378)
chr8 (186-254)||(18690160-18690228)
chr8 (299-378)||(17657021-17657100)
chr8 (316-377)||(15906686-15906747)
chr8 (114-203)||(34866375-34866464)
[»] chr2 (41 HSPs)
chr2 (280-446)||(7874255-7874419)
chr2 (280-452)||(14405163-14405332)
chr2 (109-280)||(17105062-17105236)
chr2 (284-440)||(39338825-39338978)
chr2 (295-446)||(14106475-14106626)
chr2 (320-455)||(5254260-5254393)
chr2 (294-455)||(387151-387311)
chr2 (452-581)||(14106308-14106442)
chr2 (119-282)||(41087040-41087208)
chr2 (452-579)||(7460837-7460969)
chr2 (452-582)||(7874452-7874586)
chr2 (99-245)||(37770933-37771085)
chr2 (452-588)||(5254417-5254553)
chr2 (107-244)||(1269128-1269270)
chr2 (280-360)||(10524061-10524141)
chr2 (299-378)||(1269466-1269545)
chr2 (44-280)||(7695654-7695893)
chr2 (115-280)||(39339121-39339290)
chr2 (280-353)||(37770685-37770758)
chr2 (280-446)||(10173532-10173695)
chr2 (284-374)||(17105379-17105470)
chr2 (185-254)||(22885412-22885481)
chr2 (323-378)||(16959989-16960044)
chr2 (300-446)||(22885088-22885229)
chr2 (299-360)||(9560825-9560886)
chr2 (280-361)||(41086824-41086904)
chr2 (328-446)||(2062901-2063015)
chr2 (186-254)||(15710437-15710505)
chr2 (186-254)||(15722900-15722968)
chr2 (324-446)||(34230209-34230327)
chr2 (299-361)||(8520385-8520447)
chr2 (412-446)||(16952337-16952371)
chr2 (412-446)||(17023002-17023036)
chr2 (412-446)||(17060308-17060342)
chr2 (174-236)||(25505196-25505258)
chr2 (551-588)||(14437046-14437083)
chr2 (280-369)||(27739939-27740028)
chr2 (180-280)||(10523819-10523922)
chr2 (185-228)||(16952681-16952725)
chr2 (185-228)||(17023346-17023390)
chr2 (185-228)||(17060652-17060696)
[»] chr4 (29 HSPs)
chr4 (287-455)||(31050605-31050772)
chr4 (280-440)||(8254991-8255148)
chr4 (280-440)||(8268409-8268566)
chr4 (280-455)||(2825747-2825920)
chr4 (109-280)||(19672753-19672927)
chr4 (114-280)||(8254683-8254852)
chr4 (114-280)||(8268101-8268270)
chr4 (280-378)||(53823440-53823538)
chr4 (280-440)||(30964405-30964562)
chr4 (364-455)||(35341282-35341371)
chr4 (280-422)||(4305689-4305828)
chr4 (130-280)||(31050917-31051070)
chr4 (290-378)||(19815243-19815331)
chr4 (280-431)||(25753136-25753283)
chr4 (280-378)||(38929791-38929889)
chr4 (313-375)||(49747524-49747586)
chr4 (121-280)||(30964104-30964266)
chr4 (280-377)||(2061758-2061855)
chr4 (114-276)||(4305381-4305546)
chr4 (292-378)||(19673077-19673162)
chr4 (280-378)||(22811179-22811276)
chr4 (303-360)||(35800476-35800533)
chr4 (280-360)||(21387241-21387321)
chr4 (481-588)||(2825978-2826084)
chr4 (195-280)||(22811416-22811504)
chr4 (287-358)||(19311381-19311451)
chr4 (299-369)||(36962643-36962713)
chr4 (327-369)||(39041302-39041344)
chr4 (299-360)||(39421050-39421111)
[»] chr5 (25 HSPs)
chr5 (280-440)||(29087445-29087603)
chr5 (280-440)||(34378062-34378219)
chr5 (280-440)||(698325-698482)
chr5 (280-379)||(7392049-7392148)
chr5 (114-254)||(29087204-29087346)
chr5 (109-245)||(26046256-26046395)
chr5 (109-254)||(7195523-7195672)
chr5 (141-254)||(24072546-24072659)
chr5 (280-431)||(18593207-18593355)
chr5 (280-377)||(33258902-33258999)
chr5 (44-244)||(13954525-13954728)
chr5 (280-454)||(14302377-14302547)
chr5 (280-360)||(13954271-13954350)
chr5 (280-378)||(7195258-7195355)
chr5 (383-446)||(7162270-7162333)
chr5 (280-378)||(8297432-8297530)
chr5 (280-377)||(24072286-24072383)
chr5 (280-369)||(31721641-31721730)
chr5 (319-378)||(22675343-22675402)
chr5 (282-375)||(25991973-25992066)
chr5 (316-360)||(26046001-26046045)
chr5 (174-236)||(8730649-8730711)
chr5 (299-369)||(28765630-28765700)
chr5 (327-359)||(25341709-25341741)
chr5 (185-236)||(27712819-27712871)
[»] chr6 (17 HSPs)
chr6 (114-280)||(16510549-16510718)
chr6 (119-254)||(20702086-20702225)
chr6 (280-375)||(16510323-16510418)
chr6 (280-440)||(3117457-3117614)
chr6 (280-446)||(20701758-20701920)
chr6 (115-254)||(12793776-12793916)
chr6 (280-353)||(3880627-3880700)
chr6 (280-335)||(15132585-15132640)
chr6 (292-374)||(32935362-32935444)
chr6 (114-280)||(15132778-15132947)
chr6 (300-374)||(12794098-12794173)
chr6 (303-374)||(26216042-26216112)
chr6 (303-359)||(26534757-26534813)
chr6 (332-378)||(13423482-13423528)
chr6 (327-360)||(7546466-7546499)
chr6 (284-377)||(9224010-9224102)
chr6 (313-369)||(34105410-34105466)
[»] scaffold0068 (2 HSPs)
scaffold0068 (280-431)||(35741-35888)
scaffold0068 (130-280)||(36028-36181)
[»] scaffold0063 (2 HSPs)
scaffold0063 (36-244)||(57768-57981)
scaffold0063 (303-353)||(58114-58164)
[»] scaffold0200 (1 HSPs)
scaffold0200 (299-446)||(19366-19509)
[»] scaffold0050 (2 HSPs)
scaffold0050 (280-376)||(36671-36767)
scaffold0050 (97-245)||(36340-36495)
[»] scaffold0119 (2 HSPs)
scaffold0119 (107-244)||(42432-42574)
scaffold0119 (299-378)||(42157-42236)
[»] scaffold0062 (4 HSPs)
scaffold0062 (148-230)||(46784-46866)
scaffold0062 (280-360)||(47057-47137)
scaffold0062 (186-254)||(59349-59417)
scaffold0062 (186-254)||(71457-71525)
[»] scaffold1613 (2 HSPs)
scaffold1613 (191-254)||(1296-1359)
scaffold1613 (307-377)||(1037-1107)
[»] scaffold0343 (1 HSPs)
scaffold0343 (385-431)||(5772-5818)


Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 49)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Original strand, 6584622 - 6585176
Alignment:
Q  18 agctttgagtgggggttcggtcgtggttttttggactcggatttggtatctgaacggttgacggatgagagctacatttgggggtggtagatgttattta 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| | |||||||||| ||||||||| | |||||||||    
T  6584622 agctttgagtgggggttcggtcgtggttttttggactcgaatttggtatctgaaaggttggcggacgggagctacatt-gggggtggttggtgttattta 6584720  T
Q  118 ggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt-catttttggg 216  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  6584721 ggtgaggaggcaggtgtttgttggggtgatttcttttggagatagcctctattacacgggtccatgatcgtcgtcgctagctcttgtttgcatttatggg 6584820  T
Q  217 ttgttaaggtgtttagggtgtttggaggatgcgtgtccgttgcgatgagccttttccttttgatctctggtgtaccgggggcgaggggtgccctgctgat 316  Q
    ||||||||||||||         ||||| |||||  |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  6584821 ttgttaaggtgttt---------ggagggtgcgt--ccgttgcgatgagccttttccttttgatctatggtgtaccggaggcgaggggtgccctgctgat 6584909  T
Q  317 ttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggttttttggcttttgttttgtgctcttt 416  Q
    |||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  6584910 ttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggc--ttaagttggtttttgggcttttgttttgtgctcttt 6585007  T
Q  417 cggtggatcggaggttgagaggttgtggaacctgcatgtggctcagcttgggtgttgaagtatg-----tttattttgagggttgctctttggaggtaag 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     ||||||||||||| |||| ||||||||| ||    
T  6585008 cggtggatcggaggttgagaggttgtggaacctgcatgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgctatttggaggtgag 6585107  T
Q  512 tagcgacgatgagt-gttgtggatactgtgttttcagtgttttgtttctattaaggtgtccgtcttagg 579  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6585108 tagtgacgatgagtggttgtggatactgtgttttcagtgttttgtttctgttaaggtgtccgtcttagg 6585176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 280 - 455
Target Start/End: Original strand, 34389926 - 34390099
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||     
T  34389926 tctctggtgtactgggggtgaggagtgccctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggc- 34390024  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 455  Q
     |||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  34390025 -ttaagttggtttttgggcttttattttgtgctctttcggtggatcggaggtcgagaggttgtggaagctgcatgt 34390099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 280 - 454
Target Start/End: Complemental strand, 41089865 - 41089693
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||   ||||||||||||||  |    
T  41089865 tctctggtgtatcgggggcgaggggtgctctgctaatttggtactaaagtctggtggaccgatcacttttgattcgagattgggagtcagctctttg--a 41089768  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatg 454  Q
     | ||||||||||||  |||||||||||||| |||||||||||||||||||| | |||||||||||| |||||||    
T  41089767 ctcaagttggtttttgagcttttgttttgtgatctttcggtggatcggaggtcgcgaggttgtggaagctgcatg 41089693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 455
Target Start/End: Complemental strand, 35745944 - 35745770
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||| |||||||||||||||||||||||| || |||| ||||||||||||| ||| | |||||||||||||| ||||||   ||||| |||||||||     
T  35745944 tctctgatgtaccgggggcgaggggtgccctactaattttgttctaaagtctgatgggctgatcacttttgattcgagatcggaagtcatctctttggc- 35745846  T
Q  380 attaagttggttttttggcttttg-ttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 455  Q
     | |||||||||||| |||||||| ||||||||||||||||||||| |||||| |||||||||||||| ||||||||    
T  35745845 -tcaagttggtttttgggcttttgtttttgtgctctttcggtggattggaggtggagaggttgtggaagctgcatgt 35745770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 280 - 443
Target Start/End: Original strand, 33435073 - 33435234
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||||||||||||||||| | ||||||| |||||||||||||   ||||||||||||||| ||||||  ||||||| |||||| |     
T  33435073 tctctggtgtaccgggggcgaggggtgccctgttaatttggtactaaagtctggtgagacgatcacttttgattcgagatcgggagtcagttctttgtc- 33435171  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtg 443  Q
     | ||||| |||| | ||| |||||||||||||||||||||||||||||||| | |||||||||    
T  33435172 -tcaagttcgtttgtgggcatttgttttgtgctctttcggtggatcggaggtcgcgaggttgtg 33435234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 280 - 440
Target Start/End: Complemental strand, 47326002 - 47325845
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||| |||||| ||||||||||||||||  ||||||||||||||  |    
T  47326002 tctctggtgtaccgggggcgaggggtgccttgctaatttggtactatagtctggtgggccgatcgcttttgatttgagatcgggagtcagctctttg--a 47325905  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | |||||||||||| ||| |||||  |||||||||||| |||||||||||| | ||||||    
T  47325904 ctcaagttggtttttgggc-tttgtgctgtgctctttcgatggatcggaggtcgcgaggtt 47325845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 280 - 431
Target Start/End: Complemental strand, 3419773 - 3419624
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||| ||||||||||||||||||||||| | ||||||| ||||||| |||||| | |||||||||||||| ||||||  ||||||||||||||  |    
T  3419773 tctctggtataccgggggcgaggggtgccctgttaatttggtactaaagtgtggtgggctgatcacttttgattcgagatcgggagtcagctctttg--a 3419676  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggt 431  Q
     | |||||||||||| ||||||  || ||||||||||||||||||| |||||    
T  3419675 ctcaagttggtttttgggctttgtttctgtgctctttcggtggatcagaggt 3419624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 280 - 431
Target Start/End: Original strand, 25160779 - 25160925
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||   |||||  ||||  | |    
T  25160779 tctctggtgtaccgagggcgaggggtgccctgctaatttggttctatagtctggtggaccgattacttttgattcgagatcggaagtcaaatctt--gaa 25160876  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggt 431  Q
    ||||||||||||||| |||   ||| ||||||||||||||||||| ||||||    
T  25160877 attaagttggtttttgggc---tgtgttgtgctctttcggtggattggaggt 25160925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 280 - 440
Target Start/End: Original strand, 38306225 - 38306382
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||| |||||   ||||||| ||||||  |    
T  38306225 tctctggtgtacagggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagattgggagtcagttctttg--a 38306322  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | |||||||||||| ||| ||||| ||||||||||||| ||| |||||||| | ||||||    
T  38306323 ctcaagttggtttttgggc-tttgtgttgtgctctttcgatggttcggaggtcgcgaggtt 38306382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 280 - 454
Target Start/End: Original strand, 3867080 - 3867252
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||| |||||| ||||| |||||| ||||||| ||||| | |||||| | |||||||||||||| |||| |  ||||||| ||||||  |    
T  3867080 tctctggtgtaccgagggcgaagggtggcctgctaatttggtactaaaatatggtgggctgatcacttttgattcgagaccgggagtcagttctttg--a 3867177  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatg 454  Q
     | |||||||||||| |||||||| ||||||||||| ||||||||| ||||| | |||||| ||||| |||||||    
T  3867178 ctcaagttggtttttgggcttttgctttgtgctcttgcggtggatcagaggtcgcgaggttatggaaactgcatg 3867252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 280 - 440
Target Start/End: Original strand, 10244146 - 10244303
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||| ||||||||||||||| ||||||| ||| | |||||||| |||||||||||||||| ||||||  ||||||| ||||||  |    
T  10244146 tctctggtgtaccgggggagaggggtgccctgctaatttggtgctataatctggtgggccgatcacttttgattcgagatcgggagtcagttctttg--a 10244243  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | ||||| | |||||||| ||||| |||||||||||| |||| |||||||| | ||||||    
T  10244244 ctcaagttag-tttttggcctttgtgttgtgctctttcagtggttcggaggtcgcgaggtt 10244303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 284 - 440
Target Start/End: Original strand, 37794957 - 37795110
Alignment:
Q  284 tggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaatta 383  Q
    |||||||||||||||||||||||||||||| |||||||  || ||| |||||| ||| ||| |||||||| ||||||  ||||||| ||||||  | | |    
T  37794957 tggtgtaccgggggcgaggggtgccctgctaatttggtaatatagtatggtgggccgttcagttttgattcgagatcgggagtcagttctttg--agtca 37795054  T
Q  384 agttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
    ||||||||||| ||| ||||| ||||||||||||||||| |||||||| | ||||||    
T  37795055 agttggtttttgggc-tttgtgttgtgctctttcggtggttcggaggtcgcgaggtt 37795110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 42533663 - 42533509
Alignment:
Q  130 ggtgtttgttgg-ggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttc--atttttgggttgttaaggt 226  Q
    |||||||||| | |||||||||||||||||  ||| | |||||| |||||||||| ||||||||  | ||||||||||   |||||||||||||||||||    
T  42533663 ggtgtttgttagaggtgatttcttttggaggtagcatctgttactcgggtccatgttcgtcgtcattggctcttgtttgtgatttttgggttgttaaggt 42533564  T
Q  227 gtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttttgat 280  Q
    ||||| |||| |||||||| |||||| ||||||   |||||||||||||||||||    
T  42533563 gtttaaggtggttggaggaagcgtgtcccgttgttctgagccttttccttttgat 42533509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 280 - 454
Target Start/End: Original strand, 8745117 - 8745287
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||| |||| ||| |||||||| ||| |||||||||| ||||| |||||||| |||||||||||||||| ||||||  || |||| || ||||      
T  8745117 tctctggtgcaccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttttgattcgagatcgggattcagttcgttgg-- 8745214  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatg 454  Q
    || ||||| | |||| ||||||  || ||   |||||||||||||||||||| |||||||||||||| |||||||    
T  8745215 atcaagtttggttttgggcttt--ttatggtttctttcggtggatcggaggtcgagaggttgtggaagctgcatg 8745287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 130 - 277
Target Start/End: Original strand, 34389634 - 34389783
Alignment:
Q  130 ggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttg---ggttgttaaggt 226  Q
    ||||||||| ||||||||| ||||||||| | | || |||| | ||||||  || |||||||| |||||||| ||||  ||||||   ||||||||||||    
T  34389634 ggtgtttgtgggggtgattccttttggag-ctgactctgttgctcgggtcattgttcgtcgtcactagctctcgttttttttttgttgggttgttaaggt 34389732  T
Q  227 gtttagggtgtttggaggatgcgtgtccgttgcgatgagccttttcctttt 277  Q
    ||||||| |||||||||| ||||||| |||||||||| |||||||||||||    
T  34389733 gtttaggttgtttggagggtgcgtgttcgttgcgatgggccttttcctttt 34389783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 287 - 440
Target Start/End: Complemental strand, 5860398 - 5860248
Alignment:
Q  287 tgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagt 386  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||| ||||| || ||| ||||||||| ||||||  ||||||  ||||||  |   ||||    
T  5860398 tgtaccgggggcgaggggtgccctgctaatttggtactatagtccggtgggcctatcgcttttgattcgagatcgggagtcaattctttg--acgcaagt 5860301  T
Q  387 tggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
    |||||||| ||| ||||| ||||||||||||||||| |||||||| | ||||||    
T  5860300 tggtttttgggc-tttgtgttgtgctctttcggtggttcggaggtcgcgaggtt 5860248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 47326310 - 47326141
Alignment:
Q  115 ttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||||||||||||  || | |||||| |||||||||| ||| ||  || ||||||||||||||||||||| |||||||  ||||||||||||  |  |||    
T  47326310 ttaggtgaggaggtgggcggttgttgtgggtgatttcctttagaagcaacctttgttacacgggtccatgttcgtcgttactagctcttgtttgtgcttt 47326211  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| |||| |||| || ||||||||| |||||||| ||||| | |||||||||||||||||||    
T  47326210 ttgggtggtttaggtatttacggagtttggagggtgcgtgtcacgttgtgttgagccttttccttttgat 47326141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 37 - 276
Target Start/End: Original strand, 16954231 - 16954474
Alignment:
Q  37 gtcgtggtt-ttttggactcggatttggtatctgaacggttgacggatgagagctacatttgggggtggtagatgttatttaggtgaggaggcaggtgtt 135  Q
    ||||||||| ||||||||||||||||||| || | ||||||   |||   |||||  ||| |||| |||| | |||| |||| |||||||||   |||||    
T  16954231 gtcgtggttgttttggactcggatttggtgtcgggacggtttgtggagttgagctttattaggggttggtgggtgttgtttatgtgaggaggagagtgtt 16954330  T
Q  136 tgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt-catttttgggttgttaaggtgtttagg 233  Q
    |||||||| ||||||| | ||||| ||| ||||||||| ||||| | || | |||||| ||| |||| |||| ||||||| | |||||||||||||||||    
T  16954331 tgttgggggtgatttcgtctggaggcagtctttgttactcgggtacttgtttgtcgtcactatctctagtttgcatttttcgattgttaaggtgtttagg 16954430  T
Q  234 gtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttt 276  Q
    || ||||||||  ||| ||| ||||| | |||||||||||||||    
T  16954431 gtttttggaggtagcgggtctcgttgagttgagccttttccttt 16954474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 16954617 - 16954713
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttg 376  Q
    ||||||||||| | | || |||||||||||| |||||||||| |||||||||||| ||||||||||||||| || |||||| | |||||| ||||||    
T  16954617 tctctggtgtatcagaggtgaggggtgcccttctgatttggtcctaaagtctggttgaccgatcacttttgtttcgagatcgaaagtcagttctttg 16954713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 42533369 - 42533289
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    ||||||||| | |||||| |||||||||||| |||||||||| |||||||||||||| | |||||||||||||| ||||||    
T  42533369 tctctggtgcatcgggggtgaggggtgccctcctgatttggtcctaaagtctggtgggctgatcacttttgattcgagatc 42533289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 3420066 - 3419912
Alignment:
Q  130 ggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcatttttgggttgttaaggtg 227  Q
    |||| |||||||||||||||  ||||||  || ||| ||||||||||||||||| |||| ||| ||||||||||||  |  ||||||||| ||| |||||    
T  3420066 ggtgcttgttggggtgattttctttggaagcaacctctgttacacgggtccatgttcgttgtcactagctcttgtttgtgctttttgggtggtttaggtg 3419967  T
Q  228 tttagggtgtttggaggatgcgtgtc-cg-ttgcgatgagccttttccttttgat 280  Q
    |||| || ||||||||| |||||||| || ||| | |||||| ||||||||||||    
T  3419966 tttacggagtttggagggtgcgtgtcacgtttgtgttgagccctttccttttgat 3419912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 109 - 280
Target Start/End: Original strand, 3478003 - 3478178
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt-tc 207  Q
    |||| ||||||||||| ||  ||||||| ||||||||||||  ||||||| || |||   |||||||||| |||  |||||||| ||||||||||||  |    
T  3478003 tgttgtttaggtgaggtggggggtgttttttggggtgattttatttggaggcatcctcaattacacgggttcatattcgtcgtcactagctcttgttggc 3478102  T
Q  208 atttttgggttgttaagg-tgtttagggtg-tttggaggatgcgtgtcc-gttgcgatgagccttttccttttgat 280  Q
     ||||||||||||||||| | ||| || || |||||||| |||||||||  ||| |||||||||||||||||||||    
T  3478103 gtttttgggttgttaaggtttttttggatgttttggagggtgcgtgtccttttgagatgagccttttccttttgat 3478178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 338 - 440
Target Start/End: Complemental strand, 44353623 - 44353524
Alignment:
Q  338 ccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagag 437  Q
    |||||||||||||||||||||||  ||||||| |||||| |  ||| |||||||||| |||||| || |||||||||||||||||||||||||| | |||    
T  44353623 ccgatcacttttgatttgagatcgggagtcagttctttgac--ttatgttggtttttgggcttt-gtgttgtgctctttcggtggatcggaggtcgcgag 44353527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 44755591 - 44755664
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgattt 354  Q
    |||||||||||||| ||  |||||||||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  44755591 tctctggtgtaccgtggt-gaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattt 44755664  T

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Target: chr7; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 9106852 - 9106964
Alignment:
Q  142 ggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttgg 241  Q
    ||||||||||||| ||| | |||| |||||  | |||||||  |||||||||||||||||||||| | |||| || ||||||||||||||||||| || |    
T  9106852 ggtgatttcttttagaggccgcctctgttattcaggtccattttcgtcgtcgctagctcttgtttgagttttagggtgttaaggtgtttagggtgctttg 9106951  T
Q  242 aggatgcgtgtcc 254  Q
    ||| || ||||||    
T  9106952 agggtgggtgtcc 9106964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 1320455 - 1320580
Alignment:
Q  120 tgaggaggcaggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatg-gtcgtcgtcgctagctcttgttt-cattttt--g 214  Q
    |||||||| ||||||||||||||| ||||||||||| ||| |||||| | |||||||||||| ||  |||||||| ||||||||||||| |||||||  |    
T  1320455 tgaggaggaaggtgtttgttgggggtgatttcttttagaggcagcctattttacacgggtccttgtttcgtcgtcactagctcttgtttgcattttttag 1320554  T
Q  215 ggttgttaaggtgtttagggtgtttgg 241  Q
    | ||||| ||||||||| |||||||||    
T  1320555 gattgtt-aggtgtttatggtgtttgg 1320580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 25160477 - 25160564
Alignment:
Q  119 gtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||||||||| ||||||||||||||||||||| ||   |  || ||| ||||||||||||||||| |||||||| |||||||||||||    
T  25160477 gtgaggaggcgggtgtttgttggggtgatttccttaaaaagcaacctatgttacacgggtccatgttcgtcgtcactagctcttgttt 25160564  T

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Target: chr7; HSP #28
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 292 - 378
Target Start/End: Original strand, 3478328 - 3478414
Alignment:
Q  292 cgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    |||||| |||||||||||| ||| |||||| ||||||| |||||| |||||||||||||||| ||||||  |||| || ||||||||    
T  3478328 cgggggtgaggggtgcccttctgttttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttctttggc 3478414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 378
Target Start/End: Complemental strand, 6716853 - 6716755
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    |||||||||||||| | | |||||||||||| |||||||  |  ||||||||||| | |||||||||||||||| ||||||  ||||||| ||||||||    
T  6716853 tctctggtgtaccgagagtgaggggtgcccttctgatttaatcataaagtctggttggccgatcacttttgattcgagatcgggagtcagttctttggc 6716755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 1320758 - 1320831
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatt 353  Q
    |||||| |||| |||||| ||||||||||||  |||||||||  ||||||||||||| ||||||||||||||||    
T  1320758 tctctgatgtatcgggggtgaggggtgcccttttgatttggtcataaagtctggtgggccgatcacttttgatt 1320831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 282
Target Start/End: Original strand, 8744824 - 8744980
Alignment:
Q  130 ggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttca--tttttgggttgttaaggt 226  Q
    |||||||||||||| |||| ||||||||||    |||||||||| ||| ||| || |||||||| ||||| |||||||    ||||| ||||||||||||    
T  8744824 ggtgtttgttgggggtgatctcttttggaggtttcctttgttactcggttccttgttcgtcgtcactagcccttgtttgcgttttttcggttgttaaggt 8744923  T
Q  227 gtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgatct 282  Q
    ||||| | ||||||||||| ||| |||  |||| | |||||||| ||||||||||||    
T  8744924 gtttacgatgtttggaggaagcgagtcttgttgagttgagccttctccttttgatct 8744980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 38485520 - 38485609
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcag 369  Q
    ||||||||| || |||||  ||||||||||| |||| || ||||| ||||||||||| |||||||||||||||| ||||||  |||||||    
T  38485520 tctctggtggactgggggtaaggggtgcccttctgaatttgttctgaagtctggtgggccgatcacttttgattcgagatcgggagtcag 38485609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 16829053 - 16828957
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttg 376  Q
    ||||| ||||| | |||| |||||||||||| |||||||||| |||||||||||| | | ||||||||||| || |||||| | |||||| ||||||    
T  16829053 tctctagtgtatcaggggtgaggggtgcccttctgatttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtcagttctttg 16828957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 10243848 - 10243935
Alignment:
Q  119 gtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    ||||| |||| | ||||||||||||||||||| ||| ||  || ||| |||||||||||| |||| |||||||| |||||||||||||    
T  10243848 gtgagaaggccgatgtttgttggggtgatttcctttagaagcaacctctgttacacgggtacatgttcgtcgtcactagctcttgttt 10243935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 276
Target Start/End: Original strand, 33434779 - 33434931
Alignment:
Q  130 ggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt----catttttgggttgttaag 224  Q
    |||||||||||||| ||||||| |||| || || ||| |||||| |||||| ||| |||||||| ||||||| |||||    | ||||||||| ||| ||    
T  33434779 ggtgtttgttgggggtgatttcctttgaaggcaacctctgttactcgggtctatgttcgtcgtcactagctcctgttttgtgcttttttgggtggtttag 33434878  T
Q  225 gtgtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttt 276  Q
    || |||||||||||||||||  ||| || |||||| |  ||||||||||||||    
T  33434879 gtatttagggtgtttggagggagcgggtcccgttgtgtcgagccttttccttt 33434931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 533 - 588
Target Start/End: Original strand, 34391427 - 34391482
Alignment:
Q  533 atactgtgttttcagtgttttgtttctattaaggtgtccgtcttaggtgatgatgt 588  Q
    |||||||||||  |||||||||||||||||||||||| ||||||||||| ||||||    
T  34391427 atactgtgtttagagtgttttgtttctattaaggtgttcgtcttaggtggtgatgt 34391482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 433
Target Start/End: Complemental strand, 46133395 - 46133244
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||| ||||| ||  ||| ||||||| |||||||||| || ||||||||||  |||||| ||||||||||||||||  ||||||| ||| |||      
T  46133395 tctctggtggaccggaggttaggagtgcccttctgatttggtgctgaagtctggtgagccgatcgcttttgatttgagatcgggagtcagttctctgg-- 46133298  T
Q  380 attaag-ttggttttttggcttttgttttgtgctctttcggtggatcggaggttg 433  Q
     | ||| ||||||||| ||||||| ||| ||| || ||||||||| |||||||||    
T  46133297 ttcaagtttggtttttgggctttt-tttggtgttccttcggtggaccggaggttg 46133244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 24324911 - 24324817
Alignment:
Q  284 tggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    |||||||||||||   ||||||||||| ||||||||||  |||||| |||||| ||||||| |||||||| ||||||  ||||||  ||||||||    
T  24324911 tggtgtaccggggtttaggggtgcccttctgatttggtcttaaagtttggtgggccgatcaattttgattcgagatcgggagtcaattctttggc 24324817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 114 - 280
Target Start/End: Original strand, 37794657 - 37794826
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||| |||||||||  |||| |||||||||||||||| ||| ||  |  ||| ||||| || |||||||| |||||||| ||||||||||||  |  |||    
T  37794657 tttaagtgaggaggtgggtgcttgttggggtgatttcctttagaagcgacctctgttatacaggtccatgttcgtcgtcactagctcttgtttgtgcttt 37794756  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| ||||||||| || ||||| ||| || ||||| | ||| | ||||| |||||||||||||    
T  37794757 ttgggtggtttaggtgtttacggagtttgaagggtgtgtgtcacattgtgttgagcattttccttttgat 37794826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 114 - 280
Target Start/End: Original strand, 38305917 - 38306086
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttg--tttcattt 211  Q
    |||| |||||||||  | || |||||||||||||||| |||  | ||| ||| ||||||||||||||||| || ||||| ||||||||||  | |  |||    
T  38305917 tttaagtgaggaggtggatgcttgttggggtgatttcctttaaatacaacctctgttacacgggtccatgttcatcgtcactagctcttggttgtgcttt 38306016  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtg-tccgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| || |||||| || ||||||||| ||| ||   ||||| | |||||||||||||||||||    
T  38306017 ttgggtggtttagatgtttacggagtttggagggtgcttgcaacgttgtgttgagccttttccttttgat 38306086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 378
Target Start/End: Complemental strand, 47457139 - 47457041
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    ||||||||| | ||||||  ||||||||||  |||||| ||| || ||||||| |||||||||| |||||||||||||||   ||||||| ||||||||    
T  47457139 tctctggtggatcgggggtaaggggtgcccgtctgattaggtcctgaagtctgatggaccgatcgcttttgatttgagattgggagtcagttctttggc 47457041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 377
Target Start/End: Original strand, 13311803 - 13311900
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg 377  Q
    ||||||||| |||||||   ||||||||||  ||| ||||||  |  |||||||||| |||||||||||||||| ||||||  ||||||| |||||||    
T  13311803 tctctggtggaccggggataaggggtgcccgtctggtttggtcatgtagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgg 13311900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 6717059 - 6717024
Alignment:
Q  209 tttttgggttgttaaggtgtttagggtgtttggagg 244  Q
    |||||||||| |||||||||||||||||||||||||    
T  6717059 tttttgggtttttaaggtgtttagggtgtttggagg 6717024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 446
Target Start/End: Original strand, 36449176 - 36449210
Alignment:
Q  412 tctttcggtggatcggaggttgagaggttgtggaa 446  Q
    |||||||||||||||||||||||||||| ||||||    
T  36449176 tctttcggtggatcggaggttgagaggtggtggaa 36449210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 48162020 - 48161978
Alignment:
Q  404 ttttgtgctctttcggtggatcggaggttgagaggttgtggaa 446  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||    
T  48162020 ttttgtgctcttttggtggatcagaggtcgagaggttgtggaa 48161978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 25153231 - 25153264
Alignment:
Q  327 agtctggtggaccgatcacttttgatttgagatc 360  Q
    ||||||||||||||||||||||||||| ||||||    
T  25153231 agtctggtggaccgatcacttttgattcgagatc 25153264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 27993606 - 27993573
Alignment:
Q  327 agtctggtggaccgatcacttttgatttgagatc 360  Q
    ||||||||||||||||||||||||||| ||||||    
T  27993606 agtctggtggaccgatcacttttgattcgagatc 27993573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 9349757 - 9349793
Alignment:
Q  324 taaagtctggtggaccgatcacttttgatttgagatc 360  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  9349757 taaagtctggtgggccgatcacttttgattcgagatc 9349793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 23983286 - 23983326
Alignment:
Q  399 ttttgttttgtgctctttcggtggatcggaggttgagaggt 439  Q
    |||| ||||||| |||||||||| |||||||||||||||||    
T  23983286 tttttttttgtgttctttcggtgtatcggaggttgagaggt 23983326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 280 - 455
Target Start/End: Complemental strand, 27031957 - 27031784
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||     
T  27031957 tctctggtgtaccgggggaaaggggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggc- 27031859  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 455  Q
     | |||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27031858 -tcaagttggttttagggattttgttttgtgctctttcggtggatcggaggttgagaggttgtggaagctgcatgt 27031784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 280 - 441
Target Start/End: Complemental strand, 46814584 - 46814425
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||| ||||||     
T  46814584 tctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggc- 46814486  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttg 441  Q
     | |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  46814485 -tcaagttggttttttggcttttgttttgtgctctttcggtggatcggatgtcgagaggttg 46814425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 280 - 446
Target Start/End: Original strand, 24658893 - 24659057
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||  ||||||||||||||||     
T  24658893 tctctggtgtatcgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtcagctctttggc- 24658991  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaa 446  Q
     | |||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  24658992 -tgaagttggtttttgggctttggttttgtgctctttcggtggatcggaggtcgagaggttgtggaa 24659057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 280 - 451
Target Start/End: Original strand, 7857617 - 7857786
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  |||||| |||||| ||     
T  7857617 tctctggtgtactgggggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcaactcttttgc- 7857715  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgc 451  Q
     | |||||||||||| | |||||||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  7857716 -tgaagttggtttttggccttttgttttgtgctctttcggtggatcggtggtcgagaggttgtggaagctgc 7857786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 280 - 446
Target Start/End: Complemental strand, 24684595 - 24684431
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||||||| ||| ||||||    ||||| ||||||  |    
T  24684595 tctctggtgtaccgggggcgaggggtgccctactaatttgattctaaagtctggtgggccgatcacttttaattcgagatcggatgtcagttctttg--a 24684498  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaa 446  Q
     |  ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  24684497 ctctagttggtttttgggcttttgttttgtgctctttcggtggatcggaggtcgcgaggttgtggaa 24684431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 280 - 440
Target Start/End: Complemental strand, 24450047 - 24449890
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||||||||||||||||||||||||||  |||||| ||| ||| |||||| |||||||||||||||||||||||   |||||| |||||| |     
T  24450047 tctctggtgtaccgggggcgaggggtgccctgctattttggtactatagtttggtgggccgatcacttttgatttgagatcggaagtcagttctttgtc- 24449949  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     ||||||||| |||||||  ||||| ||||||||||| |||||||||||||| | ||||||    
T  24449948 -ttaagttgg-tttttgggatttgtgttgtgctcttttggtggatcggaggtcgcgaggtt 24449890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 280 - 440
Target Start/End: Complemental strand, 30686021 - 30685864
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||||| |||||||||||||||||||| ||||||| ||| ||||| |||| |||||||||||||||||||||||  ||||||| ||||||  |    
T  30686021 tctctggtgtacctggggcgaggggtgccctgctaatttggtactatagtcttgtgggccgatcacttttgatttgagatcgggagtcagttctttg--a 30685924  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | ||||||| |||| ||| ||||| ||||||||||||||||| |||||||| | ||||||    
T  30685923 ctcaagttggcttttgggc-tttgtgttgtgctctttcggtggttcggaggtcgcgaggtt 30685864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 280 - 440
Target Start/End: Complemental strand, 46692936 - 46692779
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||||||| ||||||||||| |||||||  || |||||||||| |||||||||||||||| ||||||  |||| || ||||||||     
T  46692936 tctctggtgtaccgggggcgagaggtgccctgctaatttggtgatatagtctggtgggccgatcacttttgattcgagatcgggagttagttctttggc- 46692838  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | |||||||||||| ||| ||||| ||||||||||||||||| |||||||| | ||||||    
T  46692837 -tcaagttggtttttgggc-tttgtgttgtgctctttcggtggttcggaggtcgcgaggtt 46692779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 52278156 - 52278279
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt-tc 207  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||  |||||||||| |||||||||||| |||||||  ||||||||||||  |    
T  52278156 tgttgtttaggtgaggaggcaggtgtttgttggggtgattttctttggaggaagcctttgtttcacgggtccatgttcgtcgttactagctcttgttggc 52278255  T
Q  208 atttttgggttgttaaggtgttta 231  Q
     |||||||||||||||||||||||    
T  52278256 gtttttgggttgttaaggtgttta 52278279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 280 - 440
Target Start/End: Original strand, 41920417 - 41920573
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||| |||| |||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||| ||||||  ||||||| ||||||  |    
T  41920417 tctctggtgtactgggg-cgaggggtgccctgctaatttggtactacagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttg--a 41920513  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | ||||||| |||| ||| ||||| |||||||||||||||||||||||||| | ||||||    
T  41920514 ctcaagttggattttgggc-tttgtgttgtgctctttcggtggatcggaggtcgcgaggtt 41920573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 280 - 440
Target Start/End: Complemental strand, 5389538 - 5389381
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||||||||||||||| ||| ||||||| ||| ||||||  || |||||||||||||||| ||||||  ||||||| ||||||  |    
T  5389538 tctctggtgtaccgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcgggagtcagttctttg--a 5389441  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | ||||| |||||| ||| ||||| ||||||||||||||||| |||||||| | ||||||    
T  5389440 ctcaagtttgtttttgggc-tttgtgttgtgctctttcggtggttcggaggtcgcgaggtt 5389381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 280 - 440
Target Start/End: Complemental strand, 31585877 - 31585720
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||| | ||| ||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||| ||||||  ||||||| ||||||  |    
T  31585877 tctctggtgtactgagggtgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttg--a 31585780  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | |||||||||||| ||| ||||| ||||||| ||||||||| |||||||| | ||||||    
T  31585779 ctcaagttggtttttgggc-tttgtgttgtgctatttcggtgggtcggaggtcgcgaggtt 31585720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 100 - 230
Target Start/End: Original strand, 16147210 - 16147341
Alignment:
Q  100 ggtggtagatgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagct 199  Q
    |||||| | |||| ||||||||||||||  ||||||  ||||||||||||| ||||||| |||||| ||||||||||| ||||| |||||||| ||||||    
T  16147210 ggtggttggtgttgtttaggtgaggaggtgggtgttgcttggggtgatttcctttggaggcagcctctgttacacgggcccatgttcgtcgtcactagct 16147309  T
Q  200 cttgttt-catttttgggttgttaaggtgttt 230  Q
    ||| ||| | ||||||||||||||||||||||    
T  16147310 cttatttgcgtttttgggttgttaaggtgttt 16147341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 288 - 440
Target Start/End: Original strand, 5459133 - 5459282
Alignment:
Q  288 gtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagtt 387  Q
    |||||||||||||||||| ||||||| ||||||| ||| |||||||||| |||||||||||||||| ||||||  ||||||  | ||||  | | |||||    
T  5459133 gtaccgggggcgaggggtaccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaattatttg--attcaagtt 5459230  T
Q  388 ggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
    | ||||| ||| ||||| |||||||||||| |||| |||||||||| ||||||    
T  5459231 gatttttgggc-tttgtgttgtgctctttcagtggttcggaggttgcgaggtt 5459282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 109 - 244
Target Start/End: Original strand, 7857301 - 7857439
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttctttt-ggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt- 206  Q
    |||| |||||||||||||| |||| ||||||||||||| | ||||| |||| | | || |||||| |||||||||| |||||||| |||||||||||||     
T  7857301 tgttttttaggtgaggaggaaggtatttgttggggtgactcctttttggaggctggctctgttactcgggtccatgttcgtcgtcactagctcttgtttg 7857400  T
Q  207 cat-ttttgggttgttaaggtgtttagggtgtttggagg 244  Q
    | | ||| ||||||| |||||||||||||||||||||||    
T  7857401 cgtctttggggttgtcaaggtgtttagggtgtttggagg 7857439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 452 - 588
Target Start/End: Original strand, 7857814 - 7857954
Alignment:
Q  452 atgtggctcagcttgggtgttgaagtatg-----tttattttgagggttgctctttggaggtaagtagcgacgatgagtg-ttgtggatactgtgttttc 545  Q
    ||||||||||| |||||||||||||| ||     ||||||||||||| || ||| ||| ||| ||||| | ||||| ||| |||||||  | |||||| |    
T  7857814 atgtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctatgggggtgagtagtggcgatgggtggttgtgga--ccgtgtttac 7857911  T
Q  546 agtgttttgtttctattaaggtgtccgtcttaggtgatgatgt 588  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  7857912 agtgttttgtttctgttaaggtgtccgtcttaggtgatgatgt 7857954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 135 - 282
Target Start/End: Complemental strand, 30686308 - 30686158
Alignment:
Q  135 ttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcatttttgggttgttaaggtgtttag 232  Q
    |||||||||||||||| ||| ||  |||| | ||||||||| ||||||| |||| ||| ||||||||||||  |  ||||||||| ||| |||||||||     
T  30686308 ttgttggggtgatttcctttagaagcagcatctgttacacgagtccatgttcgttgtcactagctcttgtttgtgctttttgggtggtttaggtgtttac 30686209  T
Q  233 ggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgatct 282  Q
    || ||||||||| | |||||| ||||| | |||||||||||||||||||||    
T  30686208 ggagtttggagggttcgtgtcacgttgtgttgagccttttccttttgatct 30686158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 114 - 280
Target Start/End: Complemental strand, 31586186 - 31586016
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt---tcatt 210  Q
    |||| |||||||||  |||| |||||||||||||||| ||| ||   | ||| ||||||||||||||||| |||||||| || |||||||||   |  ||    
T  31586186 tttaagtgaggaggtgggtgcttgttggggtgatttcctttagaagaaacctctgttacacgggtccatgttcgtcgtcactggctcttgttttgtgctt 31586087  T
Q  211 tttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    ||||||| ||| |||||||||  | ||||||||| |||||||| ||||  | |||||||||||||||||||    
T  31586086 tttgggtggtttaggtgtttacagagtttggagggtgcgtgtcacgttatgttgagccttttccttttgat 31586016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 280 - 378
Target Start/End: Complemental strand, 9313406 - 9313308
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    ||||| ||||| |||| | |||||||||||| |||||||||| ||||||||| |||| | |||||||||||||| ||||||  ||||||| ||||||||    
T  9313406 tctctcgtgtatcgggcgtgaggggtgcccttctgatttggtcctaaagtctagtgggctgatcacttttgattcgagatcgggagtcagttctttggc 9313308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 452 - 588
Target Start/End: Complemental strand, 46814387 - 46814246
Alignment:
Q  452 atgtggctcagcttgggtgttgaagtatg-----tttattttgagggttgctctttggaggtaagtagcgacgat-gagtgttgtggatactgtgttttc 545  Q
    ||||||||| || ||||||||||||||||     ||||||| ||||| || | ||||||||| ||||| |||||| ||  |||||||||||||||||| |    
T  46814387 atgtggctcggcgtgggtgttgaagtatgggagttttatttcgaggggtgttatttggaggtgagtagtgacgatggacggttgtggatactgtgtttac 46814288  T
Q  546 agtgttttgtttctattaaggtgtccgtcttaggtgatgatgt 588  Q
    || | ||||||||| |||||||||| |||||||||| ||||||    
T  46814287 ag-ggtttgtttctgttaaggtgtctgtcttaggtggtgatgt 46814246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 6583314 - 6583253
Alignment:
Q  299 gaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    |||||||||| | |||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  6583314 gaggggtgcctttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatc 6583253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 97 - 254
Target Start/End: Complemental strand, 46814910 - 46814750
Alignment:
Q  97 gggggtggtagatgttatttaggtgaggaggcaggtgtttgttggggtgattt--cttttggagacagcctttgttacacgggtccatggtcgtcgtcgc 194  Q
    |||||||| ||| ||| |||||||||||| | ||||| |||||||  |  |||  | |||||||||| ||| | || |||||||||||| | |||||| |    
T  46814910 gggggtggcagacgttgtttaggtgaggaagtaggtgcttgttggtttttttttccctttggagacaacctctatttcacgggtccatgtttgtcgtcac 46814811  T
Q  195 tagctcttgttt-catttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    | |||||||||  |  |||||||||||| |||||||||||||||||||||| |||||||||    
T  46814810 ttgctcttgttggcgcttttgggttgtttaggtgtttagggtgtttggagggtgcgtgtcc 46814750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 281
Target Start/End: Complemental strand, 10785748 - 10785582
Alignment:
Q  120 tgaggaggcaggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggt--cgtcgtcgctagctcttgttt-catttttgg 215  Q
    |||||||||| |||||| |||||| ||||||||||||||| | |||| ||||||  |||||  ||||  ||||||| ||| | ||||||| |||||||||    
T  10785748 tgaggaggcaagtgtttattgggggtgatttcttttggaggctgcctctgttacttgggtct-tggtttcgtcgtcactaacccttgtttgcatttttgg 10785650  T
Q  216 g-ttgttaaggtgtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttttgatc 281  Q
    | ||||||||||||||||||||||||||||  ||  || || ||| | ||||||||||||||||||||    
T  10785649 ggttgttaaggtgtttagggtgtttggagggagcaggtcccattgagctgagccttttccttttgatc 10785582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 46693244 - 46693152
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||  ||||||||||||||||||||| ||| ||  || ||| |||||||||||| |||| |||||||| |||||||||||||    
T  46693244 tttaagtgaggaggtgggtgtttgttggggtgatttcctttagaagcaacctctgttacacgggtacatgttcgtcgtcactagctcttgttt 46693152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 114 - 253
Target Start/End: Complemental strand, 24450357 - 24450214
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt----cat 209  Q
    |||| ||||||||||  ||| |||||||||||||||| ||| ||  || ||||||||| | ||||||||| |||||||| |||||||||||||      |    
T  24450357 tttaagtgaggaggcgtgtgcttgttggggtgatttcctttagaagcaacctttgttaaatgggtccatgttcgtcgtctctagctcttgtttgtgcttt 24450258  T
Q  210 ttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc 253  Q
    |||||||| ||| ||||||||| || |||||| || ||||||||    
T  24450257 ttttgggtggtttaggtgtttacggagtttggggggtgcgtgtc 24450214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 115 - 245
Target Start/End: Original strand, 27101966 - 27102089
Alignment:
Q  115 ttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcattttt 213  Q
    |||||||||||||| ||||| ||||| ||||  |||||||||||| | |||| |||||| ||||||| |  |||||||| | |||||||||||           
T  27101966 ttaggtgaggaggcgggtgtctgttgagggtattttcttttggaggcggcctctgttactcgggtccttcttcgtcgtcacgagctcttgttt------- 27102058  T
Q  214 gggttgttaaggtgtttagggtgtttggagga 245  Q
     |||||||||||||||||||||||||||||||    
T  27102059 -ggttgttaaggtgtttagggtgtttggagga 27102089  T

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Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 4651744 - 4651833
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcag 369  Q
    ||||||||||||||||||  ||||||||||| |||| || ||||  |||||||| || |||||||||||||||| ||||||  |||||||    
T  4651744 tctctggtgtaccgggggtaaggggtgcccttctgaatttgttccgaagtctggggggccgatcacttttgattcgagatcgggagtcag 4651833  T

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Target: chr1; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 17033571 - 17033647
Alignment:
Q  301 ggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg 377  Q
    |||||||||| |||||||||| ||| |||||||||| |||||||||||||| | ||||||  ||||||| |||||||    
T  17033571 ggggtgcccttctgatttggtcctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttgg 17033647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 20113946 - 20113854
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| ||||||||||  ||| |||||||||||||||| ||| ||  || ||| |||||||||||| |||| |||||||| |||||||||||||    
T  20113946 tttaagtgaggaggcgagtgcttgttggggtgatttcctttagaagcaacctatgttacacgggttcatgttcgtcgtctctagctcttgttt 20113854  T

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Target: chr1; HSP #30
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 34774847 - 34774907
Alignment:
Q  292 cgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgat 352  Q
    |||||| ||| |||||||| |||||||||| |||| |||||||||||||||||||||||||    
T  34774847 cgggggtgagtggtgcccttctgatttggtcctaacgtctggtggaccgatcacttttgat 34774907  T

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Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 20113638 - 20113565
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatt 353  Q
    |||| ||||||||||||||||||||||||||||| |||||||  || |||||| |||  |||||| ||||||||    
T  20113638 tctcgggtgtaccgggggcgaggggtgccctgctaatttggtattatagtctgctgggacgatcatttttgatt 20113565  T

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Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 19598600 - 19598696
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttg 376  Q
    ||||||||| |||| |||  ||||||||||  ||| || ||| || ||||||||||| |||||| ||||||||| |||||| |||||||| ||||||    
T  19598600 tctctggtggaccgagggtaaggggtgcccgtctggttgggtcctgaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttg 19598696  T

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Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 24684901 - 24684809
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||| |||| ||||||||||||| || ||||||  || ||| ||||||| |||||| || || ||||| |||||||||||||    
T  24684901 tttatgtgaggaggcgggtggttgttggggtgatgtcctttggaagcaacctatgttacatgggtccttgttcatcgtcactagctcttgttt 24684809  T

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Target: chr1; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 40933839 - 40933907
Alignment:
Q  292 cgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    |||||| |||||||| ||| ||| |||||||| ||||| ||||| ||||||| ||||||||||||||||    
T  40933839 cgggggtgaggggtgtcctcctgttttggttcgaaagtttggtgaaccgatcgcttttgatttgagatc 40933907  T

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Target: chr1; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 41920137 - 41920228
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| ||||||| ||||||| |||||||| ||||||| ||| ||  || ||| | ||||||||||||||| |||||||| |||||||||||||    
T  41920137 tttaagtgaggatgcaggtgcttgttggg-tgatttcctttagaagcaacctctattacacgggtccatgttcgtcgtcactagctcttgttt 41920228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 119 - 245
Target Start/End: Complemental strand, 9313649 - 9313517
Alignment:
Q  119 gtgaggaggcaggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgt-ttcattttt--- 213  Q
    |||||||||  || ||||||||||| |||||||||||| || |||||||||||||  |||||| || | ||||||  |||||||||| | | |||||       
T  9313649 gtgaggaggagggcgtttgttgggggtgatttcttttgaaggcagcctttgttacttgggtccttgtttgtcgtcaatagctcttgtatgcgtttttttg 9313550  T
Q  214 -gggttgttaaggtgtttagggtgtttggagga 245  Q
     |||||| ||||||||||| |||||||||||||    
T  9313549 ggggttgctaaggtgtttatggtgtttggagga 9313517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 97 - 254
Target Start/End: Original strand, 24658566 - 24658725
Alignment:
Q  97 gggggtggtagatgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggt-cgtcgtcgct 195  Q
    |||||||| || |||  |||||||||||||   | || ||||||||||| |||| ||||||| || ||| |||| ||  |||||||| | ||||||| ||    
T  24658566 gggggtggcaggtgtcgtttaggtgaggagatggatgcttgttggggtgttttcctttggagccaacctctgtttcataggtccatgattcgtcgtcact 24658665  T
Q  196 agctcttgttt-catttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
     |||||||||  |  |||||||||||| || ||||||||||||||||||| || ||||||    
T  24658666 tgctcttgttggcgcttttgggttgtttagatgtttagggtgtttggagggtgtgtgtcc 24658725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 19598342 - 19598440
Alignment:
Q  141 gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgttt 239  Q
    |||||||| ||||||||||| |||| |||||  | |||||||  |||| |||||||  ||| |||| | |||||||| | |||||||||||||||||||    
T  19598342 gggtgattccttttggagaccgcctctgttattcaggtccatattcgttgtcgctacatctagtttgagttttgggtggctaaggtgtttagggtgttt 19598440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 588
Target Start/End: Complemental strand, 27031677 - 27031620
Alignment:
Q  530 tggatactgtgttttcagtgttttgtttctattaaggtgtccgtcttaggtgatgatgt 588  Q
    |||||||||||||| ||| |||| |||||| ||||||||||||||||||||| ||||||    
T  27031677 tggatactgtgtttacagggttt-gtttctgttaaggtgtccgtcttaggtggtgatgt 27031620  T

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Target: chr1; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 361
Target Start/End: Original strand, 27905411 - 27905457
Alignment:
Q  315 atttggttctaaagtctggtggaccgatcacttttgatttgagatca 361  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||    
T  27905411 atttgggtttaaagtctggtggaccgatcacttttgattcgagatca 27905457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 481 - 581
Target Start/End: Original strand, 24659123 - 24659223
Alignment:
Q  481 tttattttgagggttgctctttggaggtaagtagcgacgatgagtg-ttgtggatactgtgttttcagtgttttgtttctattaaggtgtccgtcttagg 579  Q
    ||||||||||||| || | ||||| ||| ||||| ||||||| ||| || ||| |||||||||| || ||||| |||||| ||||||||||| |||||||    
T  24659123 tttattttgaggggtgttatttgggggtgagtagtgacgatgggtggttatggttactgtgtttacaatgttt-gtttcttttaaggtgtccatcttagg 24659221  T
Q  580 tg 581  Q
    ||    
T  24659222 tg 24659223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 446
Target Start/End: Original strand, 27102154 - 27102317
Alignment:
Q  280 tctctggtgtaccgggggcgagggg-tgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    |||||||||||||| ||| |||||| |||||| ||| ||||||   |||||||   || |||||||||||||||| ||||||  ||||||| |||||||     
T  27102154 tctctggtgtaccgagggtgagggggtgcccttctgttttggtctcaaagtctaacgggccgatcacttttgattcgagatcgggagtcagttctttgg- 27102252  T
Q  379 aattaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaa 446  Q
     || ||||| | |||| ||||||  ||  |   |||||||||||||||||||| ||||||| ||||||    
T  27102253 -atcaagtttggttttgggcttt--ttacggtttctttcggtggatcggaggtcgagaggtggtggaa 27102317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 42374131 - 42374216
Alignment:
Q  284 tggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcag 369  Q
    |||||||||| |||   |||||||||| ||||||||||  |   |||||||||||||||| ||||||||||||||||  |||||||    
T  42374131 tggtgtaccgagggtttggggtgcccttctgatttggtcatgttgtctggtggaccgatcgcttttgatttgagatcgggagtcag 42374216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 27032231 - 27032147
Alignment:
Q  171 acacgggtccatggtcgtcgtcgctagctcttgtt-tcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    |||||||||  || |||||||| || ||||||||| ||  |||||||||||| |||||| ||||||||||||||| || ||||||    
T  27032231 acacgggtctttgttcgtcgtcacttgctcttgttatcgcttttgggttgtttaggtgtgtagggtgtttggagggtgtgtgtcc 27032147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 38545080 - 38545017
Alignment:
Q  191 tcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    |||||||||||||||| | |||||||| |||||| ||||||||||| || |||| || ||||||    
T  38545080 tcgctagctcttgtttgagttttgggtcgttaagatgtttagggtgctttgagggtgtgtgtcc 38545017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 38544828 - 38544758
Alignment:
Q  307 ccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg 377  Q
    |||| ||||||||||  | ||||||||||| |||||| ||||||||| ||||||  ||||||| |||||||    
T  38544828 cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgg 38544758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 32864659 - 32864598
Alignment:
Q  299 gaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    |||||||||||| | |||||||| |||||| ||||||| || ||||||||| ||| ||||||    
T  32864659 gaggggtgcccttccgatttggtcctaaaggctggtgggccaatcacttttaattcgagatc 32864598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 17033273 - 17033361
Alignment:
Q  141 gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtt 229  Q
    |||||||||||||||||| | |||| |||||   ||||||||  ||||||||| | ||| |||||| | ||||||||| || |||||||    
T  17033273 gggtgatttcttttggaggcggcctatgttatttgggtccattttcgtcgtcgttggctattgtttgagttttgggttattgaggtgtt 17033361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 280 - 446
Target Start/End: Complemental strand, 23328467 - 23328303
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||  |||| |||| ||||||     
T  23328467 tctctggtgtaccgggggcgaggggtgccctgttgatttggttctaaagtttggtggaccgatcacttttgattcgagatcgggagttagctttttggc- 23328369  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaa 446  Q
     | ||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23328368 -tcaagttggtttttgagcttttgttttgtgctctttcggtggatcggaggtcgagaggttgtggaa 23328303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 296 - 455
Target Start/End: Original strand, 45398776 - 45398933
Alignment:
Q  296 ggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggtttttt 395  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||||  | ||||||||||||||     
T  45398776 ggcgaggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcgagagtcagctctttg--atttaagttggtttttg 45398873  T
Q  396 ggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 455  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||||| ||||||||    
T  45398874 ggcttttgttttatgctctttcgatggatcggaggtcgagaggttgtggaagctgcatgt 45398933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 280 - 455
Target Start/End: Complemental strand, 40023688 - 40023516
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||| |||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||  |||||   ||||||||     
T  40023688 tctctagtgtaccgggggcgaggg-tgccctgctgattttgttttaaagtctggtggaccgatcacttttgattcgagatcgggagtcgattctttggc- 40023591  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 455  Q
     |||||||||||||| |||||||||||||||||||||||||||||| ||||  | |||||||||||| ||||||||    
T  40023590 -ttaagttggtttttgggcttttgttttgtgctctttcggtggatcagaggacgggaggttgtggaagctgcatgt 40023516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 280 - 454
Target Start/End: Original strand, 19176467 - 19176638
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||| ||||||||| | ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||  ||||||| ||||||  |    
T  19176467 tctctgatgtaccgggagtgaggg-tgccctgctaatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttg--a 19176563  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatg 454  Q
     | |||||||||||| |||||||| |||||||||||| |||||||||||||| |  ||||||||||| |||||||    
T  19176564 ctcaagttggtttttgggcttttgatttgtgctcttttggtggatcggaggtcgcaaggttgtggaagctgcatg 19176638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 281 - 440
Target Start/End: Complemental strand, 2392622 - 2392466
Alignment:
Q  281 ctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaa 380  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||||||||| |||||    |||||| |||||| |      
T  2392622 ctctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattggaagtcagttctttgtc-- 2392525  T
Q  381 ttaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
    |||||||||||||| ||| ||||| |||||||||||||||||||||||||| | ||||||    
T  2392524 ttaagttggtttttgggc-tttgtgttgtgctctttcggtggatcggaggtcgcgaggtt 2392466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 280 - 443
Target Start/End: Complemental strand, 9584170 - 9584009
Alignment:
Q  280 tctctggtgtaccgggggcgag-gggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    ||||| |||||||||||| ||| |||||||||||| ||||| | ||||||||||||||| ||||||||||||||| ||||||  ||||||| |||||| |    
T  9584170 tctcttgtgtaccggggg-gagagggtgccctgctaatttgatactaaagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttgtc 9584072  T
Q  379 aattaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtg 443  Q
      | ||| |||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  9584071 --tcaagatggtttttgggcttttgttttgtgatctttcggtggatcggaggttgcgaggttgtg 9584009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 280 - 440
Target Start/End: Complemental strand, 34475871 - 34475714
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||| ||||||  ||||||  ||||  | |    
T  34475871 tctctggtgtaccgggggcgaggggtgccctgctaatttgtttctatagtctggtgggccgatcacttttgattcgagatcgggagtcaaatctt--gga 34475774  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
    ||||||||| ||||| ||| ||||| ||||||||||||||||||| |||||| | ||||||    
T  34475773 attaagttgatttttgggc-tttgtgttgtgctctttcggtggattggaggtcgcgaggtt 34475714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 280 - 440
Target Start/End: Original strand, 20611747 - 20611904
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||||||||||||||||||| |||| || ||| ||| || ||| ||||||| |||||||| ||||||  ||||||| ||||||  |    
T  20611747 tctctggtgtaccgggggcgaggggtgccctgctaatttcgtactatagtttgttgggccgatcatttttgattcgagatcgggagtcagttctttg--a 20611844  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     |||||||||||||| ||| ||||  |||||||||||||||||||||||||| | ||||||    
T  20611845 cttaagttggtttttgggc-tttgcgttgtgctctttcggtggatcggaggtcgcgaggtt 20611904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 109 - 282
Target Start/End: Original strand, 37123040 - 37123218
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt- 206  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||| |||| | |||| || ||| ||||||| || |||||||| |||||||||||||     
T  37123040 tgttgtttaggtgaggaggcaggtgtttgttgagggtgatttctttcggaggcggcctctggtactcgggtccttgttcgtcgtcactagctcttgtttg 37123139  T
Q  207 --catttttgggttgttaaggtgtttagggtgtttggaggatgcgtg-tccgttgcgatgagccttttccttttgatct 282  Q
        |||| |||||||||||| ||||||||||||||||||| ||| | ||| ||| | |||| ||||||||||||||||    
T  37123140 tgttttttggggttgttaaggagtttagggtgtttggaggaagcgggttccattgagttgagtcttttccttttgatct 37123218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 315 - 446
Target Start/End: Original strand, 43012374 - 43012503
Alignment:
Q  315 atttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggttttttggcttttgttttgtgctct 414  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||  ||||||| ||||||  | | ||||||||||||  ||||||||||||||||||    
T  43012374 atttggttctaaagtctggtggcccgatcacttttgattcgagatcgggagtcagttctttg--actcaagttggtttttgagcttttgttttgtgctct 43012471  T
Q  415 ttcggtggatcggaggttgagaggttgtggaa 446  Q
    ||||||| ||| ||||| | ||||||||||||    
T  43012472 ttcggtgaatcagaggtcgcgaggttgtggaa 43012503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 130 - 277
Target Start/End: Complemental strand, 40023975 - 40023829
Alignment:
Q  130 ggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtt 229  Q
    ||||||||| ||||||||| ||||||||| | | || |||| | ||||||| || ||||| || |||||||| ||||  || ||||||||||||||||||    
T  40023975 ggtgtttgtgggggtgattccttttggag-ctgactctgttgctcgggtccttgttcgtcctcactagctctcgtttttttgttgggttgttaaggtgtt 40023877  T
Q  230 tagggtgtttggaggatgcgtgtccgttgcgatgagccttttcctttt 277  Q
    || |||||||||||| ||||||||||||| ||||||||||||||||||    
T  40023876 taaggtgtttggagggtgcgtgtccgttgtgatgagccttttcctttt 40023829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 44 - 280
Target Start/End: Original strand, 47235301 - 47235541
Alignment:
Q  44 ttttttggactcggatttggtatctgaacggttgacggatgagagctacatttgggggtggtagatgttatttaggtgaggaggcaggtgtttgttgggg 143  Q
    ||||||||||| ||||||||| ||  |||||||  |||| | |||| | | | | ||||||  | |||| |||| |||||||||  |||||| |||||||    
T  47235301 ttttttggacttggatttggtgtcaaaacggtttgcggacgggagcaataatagagggtggctggtgttgtttaagtgaggaggtgggtgttggttgggg 47235400  T
Q  144 tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt---catttttgggttgttaaggtgtttagggtgtttg 240  Q
    ||||||| ||| ||  || ||||||||||||||||||||| || ||||| |||||||||||||     ||||||||| ||| ||||||||| || |||||    
T  47235401 tgatttcctttagaagcaacctttgttacacgggtccatgttcatcgtctctagctcttgtttgtgtttttttgggtggtttaggtgtttacggagtttg 47235500  T
Q  241 gaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||| |||||||| ||||| | |||||||||||||||||||    
T  47235501 gagggtgcgtgtcacgttgtgttgagccttttccttttgat 47235541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 287 - 431
Target Start/End: Original strand, 45163824 - 45163967
Alignment:
Q  287 tgtaccgggggcgaggggtgccctgctgatttggttctaaagtct--ggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaa 384  Q
    ||||||| ||||||||||||||||||| ||||||| ||| |||||   |||| |||||||||||||||| |||||||  |||||| | |||| |  ||||    
T  45163824 tgtaccgagggcgaggggtgccctgctaatttggtactatagtcttgtgtgggccgatcacttttgattcgagatcagaagtcagttttttgtc--ttaa 45163921  T
Q  385 gttggttttttggcttttgttttgtgctctttcggtggatcggaggt 431  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  45163922 gttggtttttgggc-tttgtgttgtgctctttcggtggatcggaggt 45163967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 281 - 359
Target Start/End: Complemental strand, 2394369 - 2394291
Alignment:
Q  281 ctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagat 359  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||||||||| |||||    
T  2394369 ctctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagat 2394291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 114 - 279
Target Start/End: Original strand, 25647336 - 25647507
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggg--gtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcat 209  Q
    ||||||||||||||| |||||||  ||||  ||||||  ||| ||||   ||||||||||| ||||||| || |||||||| ||||||||||||  | ||    
T  25647336 tttaggtgaggaggcgggtgttttgtgggtggtgattcatttgggaggttgcctttgttactcgggtccttgttcgtcgtcactagctcttgttcgtgat 25647435  T
Q  210 ttttg-ggttgttaaggtgtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttttga 279  Q
    ||||  ||||||||||||||||||||||||||||||| ||| || |||||| | || |||||||||||||||    
T  25647436 ttttaaggttgttaaggtgtttagggtgtttggaggaagcgagtcccgttgagttgtgccttttccttttga 25647507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 284 - 359
Target Start/End: Original strand, 14193908 - 14193983
Alignment:
Q  284 tggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagat 359  Q
    |||||||||||| | |||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  14193908 tggtgtaccgggagtgaggggtgcccttctgatttggtcctaaagtctggcggaccgatcacttttgattcgagat 14193983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 115 - 280
Target Start/End: Original strand, 20611439 - 20611608
Alignment:
Q  115 ttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    ||||||||||| | ||||| |||||  |||||||||| ||| ||  || ||| ||||||||||||||||| | |||||  ||||||||||||  |  |||    
T  20611439 ttaggtgaggatgtaggtggttgttatgggtgatttcctttagaagcaacctctgttacacgggtccatgtttgtcgttactagctcttgtttgtgcttt 20611538  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| ||||||||| |  ||||||||| |||||||| ||||| | |||||||||||||||||||    
T  20611539 ttgggtagtttaggtgtttacgaagtttggagggtgcgtgtcacgttgtgttgagccttttccttttgat 20611608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 483 - 588
Target Start/End: Original strand, 45398993 - 45399099
Alignment:
Q  483 tattttgagggttgctctttggaggtaagtagcgacgatgagtg-ttgtggatactgtgttttcagtgttttgtttctattaaggtgtccgtcttaggtg 581  Q
    ||||||| ||| || || |||| ||| ||||| |||||||  || ||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||    
T  45398993 tattttgtggggtgttcgttgggggtgagtagtgacgatggatgattgtggatattgtgtttacagtgttttgtttctgttaaggtgtccgtcttaggtg 45399092  T
Q  582 atgatgt 588  Q
     ||||||    
T  45399093 gtgatgt 45399099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 386 - 451
Target Start/End: Original strand, 21342603 - 21342668
Alignment:
Q  386 ttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgc 451  Q
    ||||||||| ||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||    
T  21342603 ttggtttttaggcttttgttttgtgctctttcgatggatcagaggtcgagaggttgtggaagctgc 21342668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 452 - 586
Target Start/End: Complemental strand, 23328270 - 23328131
Alignment:
Q  452 atgtggctcagcttgggtgttgaagtatg-----tttattttgagggttgctctttggaggtaagtagcgacgatgagtg-ttgtggatactgtgttttc 545  Q
    |||||||||||||||||||||||||| ||     ||||||||||| | || ||||||| ||| ||||| ||||||| ||| ||||||||| |||| || |    
T  23328270 atgtggctcagcttgggtgttgaagtctgggagttttattttgagtggtgttctttgggggtgagtagtgacgatgggtggttgtggatattgtgcttac 23328171  T
Q  546 agtgttttgtttctattaaggtgtccgtcttaggtgatgat 586  Q
    ||||||| |||||| |||||  |||||||||||||| ||||    
T  23328170 agtgttt-gtttctgttaagaggtccgtcttaggtggtgat 23328131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 45163504 - 45163596
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||| ||||| ||||||||||||||| ||| ||  ||  |||||||||||||||||||| |||||||| ||| |||||||||    
T  45163504 tttaagtgaggaggcgggtgtatgttggggtgatttcctttagaagcaatctttgttacacgggtccatgttcgtcgtctctaactcttgttt 45163596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 14193641 - 14193763
Alignment:
Q  162 gcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattttt-gggttgttaaggtgtttagggtgtttggaggatgcgtgt-ccgtt 257  Q
    ||||||||||| ||||||| |  |||||||| ||||||||||||    |||||| |||||||||||||||||||||| ||||||||| ||| || |||||    
T  14193641 gcctttgttactcgggtccttattcgtcgtcactagctcttgttcgcgatttttggggttgttaaggtgtttagggtttttggaggaagcgagtcccgtt 14193740  T
Q  258 gcgatgagccttttccttttgat 280  Q
    | | || ||||||||||||||||    
T  14193741 gagttgtgccttttccttttgat 14193763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 327 - 440
Target Start/End: Original strand, 17550968 - 17551078
Alignment:
Q  327 agtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggttttttggcttttgttttgtgctctttcggtggatcg 426  Q
    |||||||||| |||||||||||||||| ||||||  ||||||| ||||||  | | |||||||||||| ||| ||||| ||||||||||||| || ||||    
T  17550968 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttg--actcaagttggtttttgggc-tttgtgttgtgctctttcgatgcatcg 17551064  T
Q  427 gaggttgagaggtt 440  Q
    ||||| | ||||||    
T  17551065 gaggtcgcgaggtt 17551078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 526 - 588
Target Start/End: Complemental strand, 40023412 - 40023350
Alignment:
Q  526 gttgtggatactgtgttttcagtgttttgtttctattaaggtgtccgtcttaggtgatgatgt 588  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||| |||||||||| ||||||    
T  40023412 gttgtggataccgtgtttacagtgttttgtttctgttaaggtgtctgtcttaggtggtgatgt 40023350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 253
Target Start/End: Complemental strand, 34476173 - 34476037
Alignment:
Q  119 gtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcatttttggg 216  Q
    |||||||||  ||||||||||||||||||||| ||   |  || ||| ||||||||||||||||| |||||||| ||||||||||||  |  |||||| |    
T  34476173 gtgaggaggggggtgtttgttggggtgatttccttaaaaagcaacctatgttacacgggtccatgttcgtcgtctctagctcttgtttgtgctttttgag 34476074  T
Q  217 ttgttaaggtgtttagggtgtttggaggatgcgtgtc 253  Q
    | ||| ||||||||| || ||||||||| || |||||    
T  34476073 tggtttaggtgtttacggagtttggagggtgggtgtc 34476037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 25647648 - 25647728
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    |||||||||||||||| | || ||||||||| |||||||||| ||||||||||  || || ||||||||||||| ||||||    
T  25647648 tctctggtgtaccgggagtgaagggtgcccttctgatttggtcctaaagtctgacgggcctatcacttttgattcgagatc 25647728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 14879421 - 14879479
Alignment:
Q  302 gggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    ||||||||| |||||| ||| |||||||||||||| |||||||||||||||| ||||||    
T  14879421 gggtgcccttctgattgggtcctaaagtctggtgggccgatcacttttgattcgagatc 14879479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 440
Target Start/End: Original strand, 31482868 - 31483005
Alignment:
Q  300 aggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggttttttggct 399  Q
    |||||| |||| || ||||||||||| ||||||| || | |||||||||||||| ||||||  || |||  ||||    |||||||||| ||||| ||||    
T  31482868 aggggtaccctactaatttggttctatagtctggcgggcggatcacttttgattcgagatcgggaatcaaatcttaa--aattaagttgatttttgggct 31482965  T
Q  400 tttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
    || || ||||||||||||||||||| |||||| | ||||||    
T  31482966 tt-gtgttgtgctctttcggtggattggaggtcgcgaggtt 31483005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 1653276 - 1653176
Alignment:
Q  144 tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggag 243  Q
    |||||||| ||||||   |||| |||||  |||||||||  |||| ||||||||||||||||| | |||| |||||||| ||||||||| |||||| |||    
T  1653276 tgatttctattggaggttgcctctgttattcgggtccatactcgttgtcgctagctcttgtttgagttttaggttgttatggtgtttagagtgttttgag 1653177  T
Q  244 g 244  Q
    |    
T  1653176 g 1653176  T

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Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 19176159 - 19176251
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| ||| |||||| |||| |||||||||||||||| ||||||   | |||||||||||||||||  || || ||||| |||||||||||||    
T  19176159 tttaagtgtggaggcgggtgcttgttggggtgatttcctttggaagtaacctttgttacacgggtctttgttcatcgtcactagctcttgttt 19176251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 14755380 - 14755285
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg 377  Q
    ||||||||||||||  || ||||||||||||  |  ||| || |||||||||||||| ||||||||||||||||  |||||  ||||||| |||||||    
T  14755380 tctctggtgtaccgaaggtgaggggtgccctttt--ttttgtgctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagttctttgg 14755285  T

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Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 30935507 - 30935434
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatt 353  Q
    ||||||||| ||||||||  ||||||||||| ||||||||||| | |||| |||||| | |||| |||||||||    
T  30935507 tctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtttggtgggctgatcgcttttgatt 30935434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 377
Target Start/End: Original strand, 37123346 - 37123443
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg 377  Q
    |||||| |||||||  || ||||||||||||  || |||||| ||||| | |||||| |||||||||||||||| |||||   ||||||| |||||||    
T  37123346 tctctgatgtaccgaaggagaggggtgcccttatgttttggtcctaaattttggtgggccgatcacttttgattcgagattgggagtcagttctttgg 37123443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 2394683 - 2394591
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||| |||| |||||||||||||||| ||  ||  || ||||||||||| ||||||||  | |||||| ||| |||||||||    
T  2394683 tttaagtgaggaggcgggtgcttgttggggtgatttccttaagaagcaacctttgttacatgggtccatatttgtcgtctctaactcttgttt 2394591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 377
Target Start/End: Complemental strand, 33144020 - 33143969
Alignment:
Q  326 aagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg 377  Q
    |||||||||||| ||||||||||||||| ||||||  ||||||| |||||||    
T  33144020 aagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttgg 33143969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 378
Target Start/End: Original strand, 47945669 - 47945768
Alignment:
Q  280 tctctggtgtacc-gggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    ||||||||| ||| |||||  ||||||||||  ||| || ||| |||||||| ||||| |||||||||||||||| ||||||  ||||||| | ||||||    
T  47945669 tctctggtggaccagggggtaaggggtgcccgtctggttgggtcctaaagtccggtgggccgatcacttttgattcgagatcgggagtcagttatttggc 47945768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 432
Target Start/End: Complemental strand, 1652971 - 1652855
Alignment:
Q  312 ctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggttttttggcttttgttttgtgc 411  Q
    |||||||||| || || ||| |||| |||||||||||||||| ||||||| |||| || |||||||   | ||||| | |||| ||||||  ||| |||     
T  1652971 ctgatttggtcctgaactcttgtgggccgatcacttttgattcgagatcaggagttagttctttgg--ttcaagtttggttttgggcttt--tttggtgt 1652876  T
Q  412 tctttcggtggatcggaggtt 432  Q
    |||||||||||| ||||||||    
T  1652875 tctttcggtggaccggaggtt 1652855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 320
Target Start/End: Original strand, 47235686 - 47235720
Alignment:
Q  286 gtgtaccgggggcgaggggtgccctgctgatttgg 320  Q
    |||||||||||||||||||||||||||| ||||||    
T  47235686 gtgtaccgggggcgaggggtgccctgctaatttgg 47235720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 440
Target Start/End: Original strand, 47235729 - 47235819
Alignment:
Q  347 tttgatttgagatcaagagtcagctctttggcaattaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
    ||||||| |||||| |||||| | |||||| |  |||||||||||||| |||||| || || ||||||||||||||||| ||||| | ||||||    
T  47235729 tttgattcgagatcgagagtcggttctttgac--ttaagttggtttttgggcttt-gtgttttgctctttcggtggatcagaggtcgcgaggtt 47235819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 4464368 - 4464323
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttctttt 154  Q
    |||| |||||||||| |||| |||||||| ||||||||||||||||    
T  4464368 tgttgtttaggtgagtaggcgggtgtttgatggggtgatttctttt 4464323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 6e-54; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 280 - 446
Target Start/End: Complemental strand, 15821496 - 15821332
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||  ||||||||||||||  |    
T  15821496 tctctggtgtaccgagggcgaggggtgccctgctgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagtcagctctttg--a 15821399  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaa 446  Q
     ||| |||||||||| |||||||||||||||||||||| ||||||| ||||| ||||||||||||||    
T  15821398 cttatgttggtttttgggcttttgttttgtgctctttcagtggatcagaggtcgagaggttgtggaa 15821332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 284 - 454
Target Start/End: Original strand, 36630805 - 36630973
Alignment:
Q  284 tggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaatta 383  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||||||  | ||||| ||||||  | |      
T  36630805 tggtgtaccgggggcgaggggtgccctgctaatttggttctaaagtctggtgggccgatcacttttaattcgagatcgggtgtcagttctttg--actct 36630902  T
Q  384 agttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatg 454  Q
    |||| |||||| ||||||||||||||||||||||| |||||||||||| | |||||||||| | |||||||    
T  36630903 agtttgtttttgggcttttgttttgtgctctttcgatggatcggaggtcgcgaggttgtgggagctgcatg 36630973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 280 - 440
Target Start/End: Complemental strand, 34389122 - 34388965
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||| ||||||  |    
T  34389122 tctctggtgtaccaggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcaagagtcagttctttg--a 34389025  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | |||||||||||| ||| ||||| ||||||| ||||||||||||| |||| | ||||||    
T  34389024 ctcaagttggtttttgggc-tttgtgttgtgctatttcggtggatcgtaggtcgtgaggtt 34388965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 280 - 440
Target Start/End: Complemental strand, 32066412 - 32066255
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||| || |||  ||||||||||||||  |    
T  32066412 tctctagtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgaaatcgggagtcagctctttg--a 32066315  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     |  ||||||||||| ||| ||||| ||||||||||||||||| || ||||||| ||||||    
T  32066314 ctccagttggtttttgggc-tttgtgttgtgctctttcggtggttcagaggttgcgaggtt 32066255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 280 - 433
Target Start/End: Original strand, 9519463 - 9519613
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||| ||||||||||||||| ||||||| ||| ||||| |||| ||||||| |||||||| ||||||  ||||||| ||||||  |    
T  9519463 tctctggtgtaccgggggtgaggggtgccctgctaatttggtactatagtctagtgggccgatcagttttgattcgagatcgggagtcagttctttg--a 9519560  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttg 433  Q
     | |||||||||||| ||| ||||| ||||||||||||||||| ||||||||||    
T  9519561 ctcaagttggtttttgggc-tttgtgttgtgctctttcggtgggtcggaggttg 9519613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 280 - 440
Target Start/End: Complemental strand, 37986975 - 37986818
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||||||||||||||||||| |||||||  || |||||||||| || |||| |||||||| ||||||  ||||||| ||||||  |    
T  37986975 tctctggtgtaccgggggcgaggggtgccctgctaatttggtgttatagtctggtgggccaatcatttttgattcgagatcgggagtcagttctttg--a 37986878  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | ||||||||||||  || ||||| ||||||||||||||||| |||||||| | ||||||    
T  37986877 ctcaagttggtttttgtgc-tttgtgttgtgctctttcggtggttcggaggtcgcgaggtt 37986818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 280 - 440
Target Start/End: Complemental strand, 24995512 - 24995355
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||| |||||||||||||| | |||| ||||||| ||| |||||||||| |||||||||||||||| ||||||  ||||||| ||||||  |    
T  24995512 tctctggtgtactgggggcgaggggtgtcttgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttg--a 24995415  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | |||||||||||| ||| ||||| |||||||||||| |||| || ||||| | ||||||    
T  24995414 ctcaagttggtttttgggc-tttgtgttgtgctctttcagtgggtcagaggtcgcgaggtt 24995355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 280 - 440
Target Start/End: Complemental strand, 31207478 - 31207322
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||||| |||||||||| ||||||||| ||||||| ||| |||||||||| |||||||||||||||| ||||||  ||||||| ||||||  |    
T  31207478 tctctggtgtaccaggggcgaggg-tgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttg--a 31207382  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | |||||||  ||||||  ||||| ||||||| |||||||||||||||||| | ||||||    
T  31207381 ctcaagttgg-attttgggatttgtgttgtgctttttcggtggatcggaggtcgcgaggtt 31207322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 109 - 244
Target Start/End: Complemental strand, 10248982 - 10248845
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttca 208  Q
    |||| ||||||||||||||  |||||||| |||||||||||||| |||||   | |  |||||| ||||||| |  |||||||| ||||||||||||| |    
T  10248982 tgttgtttaggtgaggaggagggtgtttgctggggtgatttcttctggaggttgtcgctgttactcgggtccttattcgtcgtcactagctcttgtttga 10248883  T
Q  209 --tttttgggttgttaaggtgtttagggtgtttggagg 244  Q
      ||||||| ||||||||||||||| ||||||||||||    
T  10248882 gttttttggattgttaaggtgtttaaggtgtttggagg 10248845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 381 - 455
Target Start/End: Complemental strand, 38577808 - 38577734
Alignment:
Q  381 ttaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 455  Q
    |||||||||||||| | |||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||    
T  38577808 ttaagttggtttttggacttttgttttgtgctctttcggtggatcagaggtcgagagtttgtggaagctgcatgt 38577734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 245
Target Start/End: Complemental strand, 17657438 - 17657297
Alignment:
Q  107 gatgttatttaggtgaggaggcaggtgtttgttgg-ggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt 205  Q
    |||||| ||||||||||||||| | |||| ||||| |||||||| |||||||| | |||| |||||  ||||||| || | || ||| ||||||||||||    
T  17657438 gatgttgtttaggtgaggaggcggatgttcgttggaggtgatttgttttggaggctgcctctgttattcgggtccttgtttgttgtcactagctcttgtt 17657339  T
Q  206 t-catttttgggt-tgttaaggtgtttagggtgtttggagga 245  Q
    | ||||||||||  |||||||||||||| |||||||||||||    
T  17657338 tgcatttttgggactgttaaggtgtttatggtgtttggagga 17657297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 34389403 - 34389311
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||| |||| |||||||||||||||| ||| ||  || ||| ||||||||||||||||| |||||||| |||||||||||||    
T  34389403 tttaagtgaggaggcgggtgcttgttggggtgatttcctttagaagcaacctctgttacacgggtccatgttcgtcgtcactagctcttgttt 34389311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 36630493 - 36630585
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||| |||| |||||||||||||||| ||||||  || ||| |||||||||||||| || |||||||| |||||||||||||    
T  36630493 tttatgtgaggaggcgggtgcttgttggggtgatttcctttggaagcaacctctgttacacgggtccttgttcgtcgtcactagctcttgttt 36630585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 338 - 440
Target Start/End: Original strand, 20138448 - 20138547
Alignment:
Q  338 ccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagag 437  Q
    |||||||||||||||||||||||  ||||||| |||||| |  ||| |||||||||| |||||| || |||||||||||||||||||||||||| | |||    
T  20138448 ccgatcacttttgatttgagatcgggagtcagttctttgac--ttatgttggtttttgggcttt-gtgttgtgctctttcggtggatcggaggtcgcgag 20138544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 280 - 378
Target Start/End: Complemental strand, 10248670 - 10248572
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    |||||||||||||||||| |||||||| ||| || |||| || ||||| | |||||||||||||||||||||||  |||||  ||||||| ||||||||    
T  10248670 tctctggtgtaccgggggtgaggggtgtccttctaattttgtcctaaaatttggtggaccgatcacttttgattcaagatcgggagtcagttctttggc 10248572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 295 - 428
Target Start/End: Complemental strand, 16457562 - 16457433
Alignment:
Q  295 gggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggttttt 394  Q
    |||||||||||| |||||| ||||| | ||| ||| |||||| |||||||||||||||| ||||||  ||||||| ||||||  | | ||||||||||||    
T  16457562 gggcgaggggtgtcctgctaatttgatactatagtttggtgg-ccgatcacttttgattcgagatcgggagtcagttctttg--actcaagttggttttt 16457466  T
Q  395 tggcttttgttttgtgctctttcggtggatcgga 428  Q
     ||| ||||| ||||||||||||||||| |||||    
T  16457465 aggc-tttgtgttgtgctctttcggtggttcgga 16457433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 107 - 254
Target Start/End: Complemental strand, 15821812 - 15821663
Alignment:
Q  107 gatgttatttaggtgaggaggcaggtgtttgttggggtgatttc-ttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt 205  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||| |||||| | || || ||||||||  | |||||| |  |||||||||    
T  15821812 gatgttgtttaggtgaggaggcgggtgtttgttggggtgatttctttttggaggcagcctctatttcatgggtccatatttgtcgtcacgtgctcttgtt 15821713  T
Q  206 -tcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
      |  ||||| |||||| ||||| | ||| |||||||||| |||||||||    
T  15821712 ggcgcttttgagttgtttaggtgctaaggttgtttggagggtgcgtgtcc 15821663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 30236245 - 30236148
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg 377  Q
    ||||||||| ||||||||  ||||||||||| ||||||||||| | |||||||||||  ||||| ||||||||| ||||||  ||||||| |||||||    
T  30236245 tctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtcagttctttgg 30236148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 527 - 588
Target Start/End: Complemental strand, 38577628 - 38577567
Alignment:
Q  527 ttgtggatactgtgttttcagtgttttgtttctattaaggtgtccgtcttaggtgatgatgt 588  Q
    ||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||||    
T  38577628 ttgtggatactgtgtttacagtgttttgtttatatttaggtgtccgtcttaggtggtgatgt 38577567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 114 - 280
Target Start/End: Complemental strand, 37987284 - 37987114
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||| |||| ||||| ||||||||||||||||||||| ||| ||  || | ||||||||| |||| |||| |||||||| ||||||||||||  |  |||    
T  37987284 tttaagtgaagaggcgggtgtttgttggggtgatttcctttagaagcaacttttgttacatgggtacatgttcgtcgtcactagctcttgtttgtgtttt 37987185  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcg-atgagccttttccttttgat 280  Q
    | |||| ||| ||||||||| || ||| ||||| |||||||| ||||| |  ||||||||||| |||||||    
T  37987184 tcgggtggtttaggtgtttacggagttaggagggtgcgtgtcacgttgtgtttgagccttttctttttgat 37987114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 32066720 - 32066628
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt 206  Q
    |||| |||||||||  ||||||||||||||||||||| ||| ||  || ||| ||||||| |||| |||| |||||||| |||||||||||||    
T  32066720 tttaagtgaggaggtgggtgtttgttggggtgatttcctttagaagcaacctctgttacatgggtacatgttcgtcgtcactagctcttgttt 32066628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 35816238 - 35816187
Alignment:
Q  404 ttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 455  Q
    ||||||||||||| |||||||||||||||||||| |||||||| ||||||||    
T  35816238 ttttgtgctcttttggtggatcggaggttgagagattgtggaagctgcatgt 35816187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 10552233 - 10552305
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatt 353  Q
    ||||||||  ||| ||||| ||||||||||| ||||||||||||| ||||||||||| |||||| |||||||||    
T  10552233 tctctggtagaccaggggcaaggggtgccct-ctgatttggttctgaagtctggtgggccgatcgcttttgatt 10552305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 587
Target Start/End: Complemental strand, 35816128 - 35816026
Alignment:
Q  485 ttttgagggttgctctttggaggtaagtagcgacgatgagtg-ttgtggatactgtgttttcagtgttttgtttctattaaggtgtccgtcttaggtgat 583  Q
    ||||||||| || ||||||| ||| ||||| || |||| ||| ||||||||||||||||| || || ||||||||| |||||||||| |||||| ||| |    
T  35816128 ttttgaggggtgttctttgggggtgagtagtgatgatgggtggttgtggatactgtgtttacaatg-tttgtttctgttaaggtgtctgtcttaagtggt 35816030  T
Q  584 gatg 587  Q
    ||||    
T  35816029 gatg 35816026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 588
Target Start/End: Complemental strand, 15821299 - 15821157
Alignment:
Q  452 atgtggctcagcttgggtgttgaagtatg-----tttattttgagggttgctctttggaggtaagtagcgacgatgagtg-ttgtggatactgtgttttc 545  Q
    ||||||||||||| || ||||||||| ||     ||||||||||||  || ||||| |  || ||||| | ||||||||| ||||||||  ||||||| |    
T  15821299 atgtggctcagctcggatgttgaagtctgggagttttattttgaggagtgttcttttggagtgagtagtggcgatgagtggttgtggattttgtgtttac 15821200  T
Q  546 agtgttttgtttctattaaggtgtccgtcttaggtgatgatgt 588  Q
      |||||||||||| |||||||||| |||||||||| ||||||    
T  15821199 cttgttttgtttctgttaaggtgtctgtcttaggtggtgatgt 15821157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 24995817 - 24995690
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||| |||||||||  |||| |||||||||||||||  ||| ||  || ||| |||||||||||||||||||   |||| ||||||||||||  |  |||    
T  24995817 tttaagtgaggaggtgggtgcttgttggggtgattttctttagaagcaacctctgttacacgggtccatggt---cgtcactagctcttgttagtgcttt 24995721  T
Q  212 ttgggttgttaaggtgtttagggtgtttgga 242  Q
    |||||| ||| ||||||||| || |||||||    
T  24995720 ttgggtggtttaggtgtttacggagtttgga 24995690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 30236490 - 30236377
Alignment:
Q  141 gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttg 240  Q
    ||||||||||| |||||| | |||| ||||   ||||| |||  |||| ||||||||||||| ||| | || |||||||| |||||||||||||| |||     
T  30236490 gggtgatttctattggaggccgcctctgtttttcgggttcatactcgttgtcgctagctcttatttgagttgtgggttgtcaaggtgtttagggtatttt 30236391  T
Q  241 gaggatgcgtgtcc 254  Q
    |||| || ||||||    
T  30236390 gagggtgtgtgtcc 30236377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 35062453 - 35062510
Alignment:
Q  312 ctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcag 369  Q
    ||||||||||||| ||||||||||| ||||||  |||||||| |||||| ||||||||    
T  35062453 ctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgagagtcag 35062510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 369
Target Start/End: Complemental strand, 12898378 - 12898302
Alignment:
Q  293 gggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcag 369  Q
    ||||||||||||||||||  | |||||||  || |||||||||  |||||||||||||||| ||||||  |||||||    
T  12898378 gggggcgaggggtgccctattaatttggtaatatagtctggtgacccgatcacttttgattcgagatccggagtcag 12898302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 18690160 - 18690228
Alignment:
Q  186 cgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||||||||||||||||||| | | |||| |||||||||||||| ||||| || |||  |||||||||    
T  18690160 cgtcgtcgctagctcttgtttgagtattggattgttaaggtgttttgggtgctttgagcgtgcgtgtcc 18690228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 17657100 - 17657021
Alignment:
Q  299 gaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    |||||||||||| || | ||||  ||||||| ||||||  ||||||||||||||| ||||||  ||||||| ||||||||    
T  17657100 gaggggtgcccttctaagttggacctaaagtatggtgggtcgatcacttttgattcgagatcgggagtcagttctttggc 17657021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 15906686 - 15906747
Alignment:
Q  316 tttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg 377  Q
    |||||| || ||||||||||| |||||||| ||||||| ||||||  ||||||| |||||||    
T  15906686 tttggtcctgaagtctggtgggccgatcacatttgattcgagatcgggagtcagttctttgg 15906747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 34866464 - 34866375
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttg 203  Q
    |||| |||||||||  |||| ||||| |||||||||| ||| ||  || ||| |||||||||||| |||| ||||||||  |||||||||    
T  34866464 tttaagtgaggaggtgggtgcttgttagggtgatttcctttagaagcaacctctgttacacgggttcatgttcgtcgtcaatagctcttg 34866375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 280 - 446
Target Start/End: Original strand, 7874255 - 7874419
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||  ||||||||||||||  |    
T  7874255 tctctagtgtaccgagggcgatgggtgccctgctgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagtcagctctttg--a 7874352  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaa 446  Q
     | |||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  7874353 ctcaagttggtttttgggcttttgttttgtgctcattcggtggatcggaggtcgagaggttgtggaa 7874419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 280 - 452
Target Start/End: Original strand, 14405163 - 14405332
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||||||||||||||||||||  || |||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||     
T  14405163 tctctggtgtaccgggggcgaggggtgct-tgatgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggc- 14405260  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgca 452  Q
     | |||||||||||| |||||||||||||||||||||||||||||| || || ||| |||||||||| |||||    
T  14405261 -tcaagttggtttttgggcttttgttttgtgctctttcggtggatcagaagtcgagtggttgtggaaactgca 14405332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 109 - 280
Target Start/End: Original strand, 17105062 - 17105236
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt-c 207  Q
    |||| |||||||||||||||  |||||||||||||||||||| ||||||| |||||| || ||||| |||||||| |||||||| ||||||||| ||| |    
T  17105062 tgttgtttaggtgaggaggcgtgtgtttgttggggtgatttcctttggaggcagcctctgctacacaggtccatgttcgtcgtcactagctcttatttgc 17105161  T
Q  208 a-tttttgggttgttaaggtgtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttttgat 280  Q
    | ||||| || |||||||||||||||||||||| |||| ||| ||| |||||| |||||||||||||||||||||    
T  17105162 acttttttggctgttaaggtgtttagggtgtttagagggtgcttgtcccgttgtgatgagccttttccttttgat 17105236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 39338978 - 39338825
Alignment:
Q  284 tggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaatta 383  Q
    |||||||||||||||||||||||||||||| ||||||| ||| |||||||||| |||||| ||||||||| ||||||  ||||||| ||||||  | | |    
T  39338978 tggtgtaccgggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg--actca 39338881  T
Q  384 agttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||||| | ||||||    
T  39338880 agttggtttttgggc-tttgtgttgtgctctttcggtggatcggaggtcgcgaggtt 39338825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 295 - 446
Target Start/End: Complemental strand, 14106626 - 14106475
Alignment:
Q  295 gggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg--caattaagttggttt 392  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  |||||  ||||||||||||| |  || ||   |||||||    
T  14106626 gggcgaggggtgccctgctgatttggtcctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagctctttagatcagtt---ttggttt 14106530  T
Q  393 tttggcttttg-ttttgtgctctttcggtggatcggaggttgagaggttgtggaa 446  Q
    || || ||||| |||||||||||||||||||||| ||||| ||||||||||||||    
T  14106529 ttgggtttttgtttttgtgctctttcggtggatcagaggtcgagaggttgtggaa 14106475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 320 - 455
Target Start/End: Original strand, 5254260 - 5254393
Alignment:
Q  320 gttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggttttttggcttttgttttgtgctctttcgg 419  Q
    |||||||||||| |||| |||||||||||| ||||||||||  ||||| |||||||||   | |||||||||||  ||||||||||||||||| ||||||    
T  5254260 gttctaaagtctagtgggccgatcacttttaatttgagatcgggagtctgctctttggt--tcaagttggttttcgggcttttgttttgtgctttttcgg 5254357  T
Q  420 tggatcggaggttgagaggttgtggaacctgcatgt 455  Q
    |||||||||||| |||||||||||||| ||||||||    
T  5254358 tggatcggaggtcgagaggttgtggaagctgcatgt 5254393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 294 - 455
Target Start/End: Original strand, 387151 - 387311
Alignment:
Q  294 ggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggtttt 393  Q
    |||||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||  ||||||  ||||||  | | |||||||||||    
T  387151 ggggcgaggggtgccctgctaatttggtactaaagtctggtgggctgatcacttttgatttgagatcgggagtcaattctttg--actcaagttggtttt 387248  T
Q  394 ttggcttttg-ttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 455  Q
    |  ||||||| ||||||||||||| ||||||||||||||   |||||| ||||| ||||||||    
T  387249 tgagcttttgtttttgtgctcttttggtggatcggaggtcacgaggttttggaagctgcatgt 387311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 452 - 581
Target Start/End: Complemental strand, 14106442 - 14106308
Alignment:
Q  452 atgtggctcagcttgggtgttgaagtatg-----tttattttgagggttgctctttggaggtaagtagcgacgatgagtg-ttgtggatactgtgttttc 545  Q
    |||||||||||||||||||||||||| ||     ||||||||||||| || ||||||| ||| ||||| ||||||||||| ||||||||||||||||| |    
T  14106442 atgtggctcagcttgggtgttgaagtctgagagttttattttgaggggtgttctttgggggtgagtagtgacgatgagtggttgtggatactgtgtttac 14106343  T
Q  546 agtgttttgtttctattaaggtgtccgtcttaggtg 581  Q
    | ||||| |||||| |||||||||||||||||||||    
T  14106342 aatgttt-gtttctgttaaggtgtccgtcttaggtg 14106308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 119 - 282
Target Start/End: Complemental strand, 41087208 - 41087040
Alignment:
Q  119 gtgaggaggcaggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgt-ttcattttt--g 214  Q
    |||||||||| |||||||||||||| ||||||||||||||| |||||| |||||| ||||||| |  |||||||  ||||||||||| | | |||||  |    
T  41087208 gtgaggaggcgggtgtttgttgggggtgatttcttttggagtcagcctctgttactcgggtccttattcgtcgttactagctcttgtatgcgttttttgg 41087109  T
Q  215 ggttgttaaggtgtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttttgatct 282  Q
    |||||||||||||| |||||||||||||||  ||| || |||||| | | ||||||||||| |||||||    
T  41087108 ggttgttaaggtgtctagggtgtttggaggtagcgggtcccgttgagctaagccttttcctattgatct 41087040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 452 - 579
Target Start/End: Original strand, 7460837 - 7460969
Alignment:
Q  452 atgtggctcagcttgggtgttgaagtatg-----tttattttgagggttgctctttggaggtaagtagcgacgatgagtg-ttgtggatactgtgttttc 545  Q
    |||||||||||||||||||||||||| ||     ||||||||||||| || ||||||| | | ||||| ||||||| ||| ||||||||| ||||||| |    
T  7460837 atgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgttctttggggttgagtagtgacgatgtgtggttgtggatattgtgtttac 7460936  T
Q  546 agtgttttgtttctattaaggtgtccgtcttagg 579  Q
    ||||||| |||||| |||||||||||||||||||    
T  7460937 agtgttt-gtttctgttaaggtgtccgtcttagg 7460969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 452 - 582
Target Start/End: Original strand, 7874452 - 7874586
Alignment:
Q  452 atgtggctcagcttgggtgttgaagtatg-----tttattttgagggttgctctttggaggtaagtagcgacgatgagtg-ttgtggatactgtgttttc 545  Q
    |||||||||||||||||||||||||| |      ||||||||||||| || ||||||| ||| ||||| ||||||| ||| ||||||||||||||||| |    
T  7874452 atgtggctcagcttgggtgttgaagtcttggagttttattttgagggatgttctttgg-ggtgagtagtgacgatgggtggttgtggatactgtgtttac 7874550  T
Q  546 agtgttttgtttctattaaggtgtccgtcttaggtga 582  Q
    ||||||| |||||| | ||||||||||||||||||||    
T  7874551 agtgttt-gtttctgtcaaggtgtccgtcttaggtga 7874586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 37771085 - 37770933
Alignment:
Q  99 gggtggtagatgttatttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctag 197  Q
    ||||||| | |||| ||||||||||||||| ||||||||||| ||||||||||| |||||| | |||| | | || ||||||| || |||||||| ||||    
T  37771085 gggtggttggtgttgtttaggtgaggaggcgggtgtttgttgagggtgatttctgttggaggctgcctctataactcgggtccttgttcgtcgtcactag 37770986  T
Q  198 ctcttgttt-cattttt---gggttgttaaggtg-tttagggtgtttggagga 245  Q
    || |||||| | |||||   |||||||||||||| ||||||||||||||||||    
T  37770985 cttttgtttgcgtttttttggggttgttaaggtgttttagggtgtttggagga 37770933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 452 - 588
Target Start/End: Original strand, 5254417 - 5254553
Alignment:
Q  452 atgtggctcagcttgggtgttgaagtatgtt--tattttgagggttgctctttggaggtaagtagcgacgatgagtg-ttgtggatactgtgttttcagt 548  Q
    ||||||||||| |||||||||||||| ||    | ||||||||| || |||||||  || ||||| ||||||| ||| ||||||||||||||||| ||||    
T  5254417 atgtggctcagtttgggtgttgaagtctgagagttttttgaggggtgttctttgg--gtgagtagtgacgatgggtggttgtggatactgtgtttacagt 5254514  T
Q  549 gttttgtttctattaaggtgtccgtcttaggtgatgatgt 588  Q
    |||| |||||| ||||||||||||||||||||| ||||||    
T  5254515 gttt-gtttctgttaaggtgtccgtcttaggtggtgatgt 5254553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 1269128 - 1269270
Alignment:
Q  107 gatgttat-ttaggtgaggaggcaggtgtttgtt-ggggtgatttcttttggagacagcctttgttacacgggtccatg-gtcgtcgtcgctagctcttg 203  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||||| |||||   |||| | |||| ||||||| ||  |||||||| ||||||||||    
T  1269128 gatgttatgttaggtgaggaggcgggtgtttgttgggggtgatttcttctggaggttgcctctattactcgggtccttgtttcgtcgtcactagctcttg 1269227  T
Q  204 ttt-cattttt-gggttgttaaggtgtttagggtgtttggagg 244  Q
    ||| | ||||| |||||||||| ||||||| ||||||||||||    
T  1269228 tttgcgtttttggggttgttaaagtgtttatggtgtttggagg 1269270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 10524061 - 10524141
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    |||||||| ||| ||||||||| ||||||||||  ||||||| ||| |||||||||| |||||||||||||||| ||||||    
T  10524061 tctctggtctactgggggcgagaggtgccctgccaatttggtgctatagtctggtgggccgatcacttttgattcgagatc 10524141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 1269466 - 1269545
Alignment:
Q  299 gaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    |||||||||||| ||||||| || |||||||||||||| |||||||||||||||| ||||||   |||||| ||||||||    
T  1269466 gaggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggc 1269545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 44 - 280
Target Start/End: Original strand, 7695654 - 7695893
Alignment:
Q  44 ttttttggactcggatttggtatctgaacggttgacggatgagagctacatttgggggtggtagatgttatttaggtgaggaggcaggtgtttgttgggg 143  Q
    ||||||||||||| ||||||| |  ||||| || ||||| |||| ||  ||  ||| ||||| | |||| ||||||||| |||||  ||||||||||| |    
T  7695654 ttttttggactcgaatttggtgttggaacgatttacggacgagaactttataagggtgtggttggtgttgtttaggtgaagaggcgagtgtttgttggag 7695753  T
Q  144 t-gatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttt-tgggttgttaaggtgtttagggtgtttgg 241  Q
    | ||||| |||| ||| | |||| |||||| ||||||| || |||  ||| ||||||||| || | |||| ||||||||||||||||||||| ||||| |    
T  7695754 ttgatttattttagaggctgcctctgttactcgggtccttgttcgctgtccctagctctttttgcgttttttgggttgttaaggtgtttaggctgtttag 7695853  T
Q  242 aggatgcg-tgtccgttgcgatgagccttttccttttgat 280  Q
    | || |||   ||| ||| | |||||||||||||||||||    
T  7695854 aagaagcgaattcctttgtgttgagccttttccttttgat 7695893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 39339290 - 39339121
Alignment:
Q  115 ttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    ||||||||||| | ||||| |||||| |||||||||  ||| ||  || ||  ||||||||||||||||| |||||||  ||||||||||||  |  |||    
T  39339290 ttaggtgaggatgtaggtggttgttgtgggtgattttctttagaagcaacccctgttacacgggtccatgttcgtcgttactagctcttgtttgtgcttt 39339191  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| ||||||||| |  ||||||||| || ||||| ||||| | |||||||||||||||||||    
T  39339190 ttgggtggtttaggtgtttacgaagtttggagggtgtgtgtcacgttgtgttgagccttttccttttgat 39339121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 37770758 - 37770685
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatt 353  Q
    |||||||||||||| ||| |||||||||||  |||||||||| |||| || |||||| ||||||||||||||||    
T  37770758 tctctggtgtaccgagggtgaggggtgcccatctgatttggtcctaaggtttggtgggccgatcacttttgatt 37770685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 446
Target Start/End: Complemental strand, 10173695 - 10173532
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||||| | || || |||||| ||  || |||||| ||||||||| |||| |||||||||||||||| ||||||   ||| || | ||||||     
T  10173695 tctctggtgtaccagaggtgaagggtgctcttttgttttggtcctaaagtctagtgggccgatcacttttgattcgagatcggaagtaagttatttggc- 10173597  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaa 446  Q
     | ||||| | |||| |||||||| || ||| |||||||||| ||||||||| ||||||| ||||||    
T  10173596 -tcaagtttggttttgggcttttg-ttggtgttctttcggtgaatcggaggtcgagaggtggtggaa 10173532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 374
Target Start/End: Original strand, 17105379 - 17105470
Alignment:
Q  284 tggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcac-ttttgatttgagatcaagagtcagctctt 374  Q
    ||||||||| |||| |||||||||||| |||||||||| || ||||||| ||| |||||||| |||||||| |||||| ||| |||| ||||    
T  17105379 tggtgtaccaggggtgaggggtgccctactgatttggtactgaagtctgatgggccgatcactttttgattcgagatcgagaatcagatctt 17105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 22885481 - 22885412
Alignment:
Q  185 tcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    |||||||||||| ||||||||| | ||| |||||| ||||||||||| |||| ||||||| |||||||||    
T  22885481 tcgtcgtcgctacctcttgtttgagtttcgggttgctaaggtgtttaaggtgattggagggtgcgtgtcc 22885412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 323 - 378
Target Start/End: Original strand, 16959989 - 16960044
Alignment:
Q  323 ctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    |||||||||||||| |||||| ||||||||| |||||| |||||||| ||||||||    
T  16959989 ctaaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttggc 16960044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 446
Target Start/End: Complemental strand, 22885229 - 22885088
Alignment:
Q  300 aggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggttttttggct 399  Q
    |||||||||| |||| |||| | || ||||||||||| |||||||||||||||| ||||||  ||||||| |||||||   | ||||| | |||| ||      
T  22885229 aggggtgccc-gctggtttgatcctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgg--ttcaagtttggttttggg-- 22885135  T
Q  400 tttgtttt-gtgctctttcggtggatcggaggttgagaggttgtggaa 446  Q
     ||||||| ||| |||||||||||| | ||||||||||||| ||||||    
T  22885134 -ttgttttggtgttctttcggtggaccagaggttgagaggtggtggaa 22885088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 9560886 - 9560825
Alignment:
Q  299 gaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    |||||||||| || |||||||  || ||||| ||||||||||||||||||||||| ||||||    
T  9560886 gaggggtgccttgatgatttgtgtcgaaagtttggtggaccgatcacttttgattcgagatc 9560825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 41086904 - 41086824
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatca 361  Q
    ||||||||||||| |||| ||||| |||||| ||||||||||  || ||||||||||  | ||||||||||||| |||||||    
T  41086904 tctctggtgtaccaggggtgaggg-tgcccttctgatttggtcatatagtctggtgggtcaatcacttttgattcgagatca 41086824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 446
Target Start/End: Original strand, 2062901 - 2063015
Alignment:
Q  328 gtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggttttttggcttttgttttgtgctctttcggtggatcgg 427  Q
    ||||||||| |||||  ||||||||| ||||||  ||||||||||||||||  | ||||| | |||| ||||||  ||| ||| |||||||||| | | |    
T  2062901 gtctggtgggccgattgcttttgattcgagatcgggagtcagctctttggc--tcaagtttggttttgggcttt--tttggtgttctttcggtgtaccag 2062996  T
Q  428 aggttgagaggttgtggaa 446  Q
    |||||| ||||||||||||    
T  2062997 aggttgtgaggttgtggaa 2063015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 15710437 - 15710505
Alignment:
Q  186 cgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||||||||||||||||||| | | |||| |||||||||||||| |||||  | ||| ||||||||||    
T  15710437 cgtcgtcgctagctcttgtttgagtattggattgttaaggtgttttgggtgccttgagcatgcgtgtcc 15710505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 15722900 - 15722968
Alignment:
Q  186 cgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||||||||||||||||||| | | |||| |||||||||||||| ||||| || |||  |||||||||    
T  15722900 cgtcgtcgctagctcttgtttgagtattggattgttaaggtgttttgggtgctttgagcgtgcgtgtcc 15722968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 446
Target Start/End: Original strand, 34230209 - 34230327
Alignment:
Q  324 taaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggttttttggcttttgttttgtgctctttcggtgga 423  Q
    |||||| || ||| ||||||| |||| ||| ||||||| ||||||| |||||||  || ||||| | |||| |||||||  | ||   ||||||||||||    
T  34230209 taaagtttgatgggccgatcattttttattcgagatcaggagtcagttctttgg--atcaagtttgattttgggctttt--tgtggtttctttcggtgga 34230304  T
Q  424 tcggaggttgagaggttgtggaa 446  Q
    |||||||||||||||| ||||||    
T  34230305 tcggaggttgagaggtggtggaa 34230327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 8520385 - 8520447
Alignment:
Q  299 gaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatca 361  Q
    |||||||||| |  ||||||| ||||| |||||| |||||| ||||||||||||| |||||||    
T  8520385 gaggggtgccttagtgatttgtttctagagtctgatggaccaatcacttttgattcgagatca 8520447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 446
Target Start/End: Complemental strand, 16952371 - 16952337
Alignment:
Q  412 tctttcggtggatcggaggttgagaggttgtggaa 446  Q
    |||||||||||||||||||||||||||| ||||||    
T  16952371 tctttcggtggatcggaggttgagaggtggtggaa 16952337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 446
Target Start/End: Complemental strand, 17023036 - 17023002
Alignment:
Q  412 tctttcggtggatcggaggttgagaggttgtggaa 446  Q
    |||||||||||||||||||||||||||| ||||||    
T  17023036 tctttcggtggatcggaggttgagaggtggtggaa 17023002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 446
Target Start/End: Complemental strand, 17060342 - 17060308
Alignment:
Q  412 tctttcggtggatcggaggttgagaggttgtggaa 446  Q
    |||||||||||||||||||||||||||| ||||||    
T  17060342 tctttcggtggatcggaggttgagaggtggtggaa 17060308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 25505258 - 25505196
Alignment:
Q  174 cgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtg 236  Q
    |||||||||  |||| | ||||| ||||||||| | ||||| |||||||||||||||||||||    
T  25505258 cgggtccattttcgttgacgctacctcttgtttgagttttgagttgttaaggtgtttagggtg 25505196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 588
Target Start/End: Complemental strand, 14437083 - 14437046
Alignment:
Q  551 tttgtttctattaaggtgtccgtcttaggtgatgatgt 588  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  14437083 tttgtttctgttaaggtgttcgtcttaggtgatgatgt 14437046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 27739939 - 27740028
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcag 369  Q
    ||||||||| || |||||  ||||||||||  |||  ||||| || ||||||||||| |||||| |||||||||  ||||| ||||||||    
T  27739939 tctctggtggactgggggttaggggtgcccatctggattggtcctgaagtctggtgggccgatcgcttttgattcaagatcgagagtcag 27740028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 10523819 - 10523922
Alignment:
Q  180 catggtcgtcgtcgctagctcttgtt--tcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttt 276  Q
    |||| |||||||| ||||||||||||  |  |||| |||| ||| ||||||||| || ||||| ||| |||||||| ||||| | ||||||||||| |||    
T  10523819 catgttcgtcgtcactagctcttgtttgtgcttttcgggtggtttaggtgtttacggagtttgtagggtgcgtgtcacgttgtgttgagccttttctttt 10523918  T
Q  277 tgat 280  Q
    ||||    
T  10523919 tgat 10523922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 16952725 - 16952681
Alignment:
Q  185 tcgtcgtcgctagctcttgttt-catttttgggttgttaaggtgt 228  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||    
T  16952725 tcgtcgtcactagctcttatttgcatttttgggttgttaaggtgt 16952681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 17023390 - 17023346
Alignment:
Q  185 tcgtcgtcgctagctcttgttt-catttttgggttgttaaggtgt 228  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||    
T  17023390 tcgtcgtcactagctcttatttgcatttttgggttgttaaggtgt 17023346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 17060696 - 17060652
Alignment:
Q  185 tcgtcgtcgctagctcttgttt-catttttgggttgttaaggtgt 228  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||    
T  17060696 tcgtcgtcactagctcttatttgcatttttgggttgttaaggtgt 17060652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 287 - 455
Target Start/End: Complemental strand, 31050772 - 31050605
Alignment:
Q  287 tgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagt 386  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||   ||| || |||||||   || |||    
T  31050772 tgtaccgggggcgaggggtgccctactgatttggttctaaagtctggtgggccgatcacttttgattcgagatcggaagttaggtctttgg--tttgagt 31050675  T
Q  387 tggttttttggcttttg-ttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 455  Q
    |||||||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  31050674 tggtttttgggcttttgtttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgt 31050605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 440
Target Start/End: Original strand, 8254991 - 8255148
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||  |||||||  |||||| ||||||  |    
T  8254991 tctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttctttg--a 8255088  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | |||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||    
T  8255089 ctcaagttggtttttgggc-tttgttttgtgctctttcggtggatcggaggtcgcgaggtt 8255148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 440
Target Start/End: Original strand, 8268409 - 8268566
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||  |||||||  |||||| ||||||  |    
T  8268409 tctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttctttg--a 8268506  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | |||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||    
T  8268507 ctcaagttggtttttgggc-tttgttttgtgctctttcggtggatcggaggtcgcgaggtt 8268566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 280 - 455
Target Start/End: Original strand, 2825747 - 2825920
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||| ||||||  || ||| |||||||||     
T  2825747 tctctggtgtaccgagggcgaggggtgctctgctgatttggttctaaagtccggtgggccgatcatttttgattcgagatcgggaatcacctctttggc- 2825845  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 455  Q
     | ||  |||||||| ||||||| |||||| |||||||||||||||||||||  ||||||||||||| ||||||||    
T  2825846 -tcaatgtggtttttgggcttttattttgtactctttcggtggatcggaggtctagaggttgtggaagctgcatgt 2825920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 109 - 280
Target Start/End: Original strand, 19672753 - 19672927
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt-tc 207  Q
    |||| ||||||||||||||| |||||||||| |||||||||| ||||||| || |||  ||||||||| |||||| |||||| | ||||||||||||       
T  19672753 tgttgtttaggtgaggaggcgggtgtttgtttgggtgatttcctttggaggcatcctccgttacacggatccatgttcgtcgccactagctcttgttggt 19672852  T
Q  208 atttttgggttgttaaggtgtttaggg-tgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
     ||||||||||||||||||||||||||   ||||| || |||||||| ||||| |||||||||||||||||||||    
T  19672853 gtttttgggttgttaaggtgtttagggaattttggggggtgcgtgtctcgttgagatgagccttttccttttgat 19672927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 114 - 280
Target Start/End: Original strand, 8254683 - 8254852
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||| |||||||||| |||| ||||||||| |||||  ||||||  || ||||||||||||||||||||| |||||||| ||||||||||||  | |||     
T  8254683 tttaagtgaggaggcgggtgcttgttggggagattttctttggaagcaacctttgttacacgggtccatgttcgtcgtcactagctcttgtttgtgattg 8254782  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| |||||||||  | ||||| ||| |||||||| | ||| | |||||||||||||||||||    
T  8254783 ttgggtggtttaggtgtttaccgagtttgaagggtgcgtgtcgctttgtgttgagccttttccttttgat 8254852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 114 - 280
Target Start/End: Original strand, 8268101 - 8268270
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||| |||||||||| |||| ||||||||| |||||  ||||||  || ||||||||||||||||||||| |||||||| ||||||||||||  | |||     
T  8268101 tttaagtgaggaggcgggtgcttgttggggagattttctttggaagcaacctttgttacacgggtccatgttcgtcgtcactagctcttgtttgtgattg 8268200  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||| ||| |||||||||  | ||||| ||| |||||||| | ||| | |||||||||||||||||||    
T  8268201 ttgggtggtttaggtgtttaccgagtttgaagggtgcgtgtcgctttgtgttgagccttttccttttgat 8268270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 280 - 378
Target Start/End: Complemental strand, 53823538 - 53823440
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    ||||||||||||||| || |||||||||||| ||||||||||  |||||||||||||||| ||||||||||||| ||||||  ||||||| ||||||||    
T  53823538 tctctggtgtaccggaggtgaggggtgcccttctgatttggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggc 53823440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 280 - 440
Target Start/End: Original strand, 30964405 - 30964562
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||| ||||||||||||||||||| ||||||| ||| | |||| ||| |||||||||||||||| | ||||  ||||| | ||||||  |    
T  30964405 tctctggtgtaccgagggcgaggggtgccctgctaatttggtactataatctgatgggccgatcacttttgattcgtgatcgggagtccgttctttg--a 30964502  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | ||||||| ||||||| |||||| ||||||||||| ||||| |||||||| | ||||||    
T  30964503 ctcaagttgg-tttttgggttttgtgttgtgctcttttggtggttcggaggtcgcgaggtt 30964562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 364 - 455
Target Start/End: Complemental strand, 35341371 - 35341282
Alignment:
Q  364 agtcagctctttggcaattaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 455  Q
    |||||||||||||||  | |||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||    
T  35341371 agtcagctctttggc--tcaagttggtttttggccttttgttttgtgctctttcggtggatcggagttcgagaggttgtggaagctgcatgt 35341282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 280 - 422
Target Start/End: Original strand, 4305689 - 4305828
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||||||||||| || ||||||||||| ||||||| ||| ||||||||||  ||||||||||||||| ||||||  |||| || |||||| |     
T  4305689 tctctggtgtaccgggggcaagcggtgccctgctaatttggtactatagtctggtggggcgatcacttttgattcgagatcgggagttagttctttgtc- 4305787  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtgg 422  Q
     | |||||||||||| ||| ||||| ||||||||||| |||||    
T  4305788 -tcaagttggtttttaggc-tttgtgttgtgctcttttggtgg 4305828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 31051070 - 31050917
Alignment:
Q  130 ggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcatttttgggttg-ttaaggt 226  Q
    |||||||||| ||||| |||| ||||||| |||||| || |||||||||||| | |||||||| ||||||||||||  || ||||||||||| |||||||    
T  31051070 ggtgtttgtttgggtgttttcctttggaggcagcctctggtacacgggtccacgttcgtcgtcactagctcttgttggtc-tttttgggttgtttaaggt 31050972  T
Q  227 gtttagggtg-tttggaggatgcgtgtccgttgcgatgagccttttccttttgat 280  Q
    |||||||| | |||||||| |||||  |||||| |||||| || |||||||||||    
T  31050971 gtttagggagttttggagggtgcgttcccgttgtgatgagtctcttccttttgat 31050917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 290 - 378
Target Start/End: Complemental strand, 19815331 - 19815243
Alignment:
Q  290 accgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    |||||||| |||||||||||| ||| |||||| |||||||||||||||||||| |||||| ||| ||||||| ||||||| ||||||||    
T  19815331 accgggggtgaggggtgcccttctgttttggtcctaaagtctggtggaccgattactttttattcgagatcaggagtcagttctttggc 19815243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 280 - 431
Target Start/End: Original strand, 25753136 - 25753283
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||||||| || |||| ||||||  || ||||||| ||||||||||||||  ||||||||||||||| ||||||  ||||||| ||||||||     
T  25753136 tctctggtgtaccggaggtgaggagtgcccgtcttatttggtcctaaagtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggc- 25753234  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggt 431  Q
     | ||||| | |||| ||||||| | ||||  ||||||||||||||||||||    
T  25753235 -tcaagtttgattttgggctttt-tattgt-ttctttcggtggatcggaggt 25753283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 280 - 378
Target Start/End: Original strand, 38929791 - 38929889
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    ||||||||| ||||||||  ||||||||||  ||| || ||| || ||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||    
T  38929791 tctctggtggaccgggggtaaggggtgcccgtctggttgggtcctgaagtctgctgggccgatcacttttgattcgagatcaagagtcagttctttggc 38929889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 49747524 - 49747586
Alignment:
Q  313 tgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctcttt 375  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||| |||||    
T  49747524 tgatttggttctaaagtctggtgagccgatcacttttgatttgagatcgagagtcagttcttt 49747586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 121 - 280
Target Start/End: Original strand, 30964104 - 30964266
Alignment:
Q  121 gaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcatttttgggtt 218  Q
    |||||||  |||| ||||||||||||| || |||  |  || ||| ||||||||||||||||| |||||||| |||||| |||||  |  |||||||||     
T  30964104 gaggaggtgggtgcttgttggggtgatatcctttaaaagcaacctctgttacacgggtccatgttcgtcgtcactagctattgtttgtgctttttgggtg 30964203  T
Q  219 gttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    ||| ||||||||  || ||||||||| |||||||| ||||| | ||| |||||||||||||||    
T  30964204 gtttaggtgtttgcggagtttggagggtgcgtgtcacgttgtgttgaaccttttccttttgat 30964266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 2061855 - 2061758
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg 377  Q
    ||||||||||| ||  || ||||||||||||  ||||||| | |||||||||||||| | |||||||||||||| |||||  |||||||| |||||||    
T  2061855 tctctggtgtatcgaaggtgaggggtgccctcttgatttgatcctaaagtctggtgggctgatcacttttgattcgagattgagagtcagttctttgg 2061758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 114 - 276
Target Start/End: Original strand, 4305381 - 4305546
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||| |||||||||  |||| |||||||||||||||| ||| ||  ||   | ||||||| || |||||| |||||||| ||||||||||||  |  |||    
T  4305381 tttaagtgaggaggtgggtgcttgttggggtgatttcctttagaagcaatatctgttacatggatccatgttcgtcgtcactagctcttgtttgtgcttt 4305480  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttt 276  Q
    ||||||||||  |||||||  |||||||||| | | |||||| ||||| | |||||||||||||||    
T  4305481 ttgggttgtttgggtgttttcggtgtttggaaggttcgtgtcacgttgtgttgagccttttccttt 4305546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 292 - 378
Target Start/End: Original strand, 19673077 - 19673162
Alignment:
Q  292 cgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    |||||| |||||||||||| ||| |||||| |||||||||||||||||  || ||||| ||| ||||||| ||||||| ||||||||    
T  19673077 cgggggtgaggggtgcccttctgttttggtcctaaagtctggtggaccattccctttt-attcgagatcaggagtcagttctttggc 19673162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 378
Target Start/End: Complemental strand, 22811276 - 22811179
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    ||||||||||| |||||  |||| ||||||| ||||||||||  ||||||||||||| ||||||| |||| ||| ||||||  ||||||| ||||||||    
T  22811276 tctctggtgtatcggggt-gaggagtgcccttctgatttggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtcagttctttggc 22811179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 360
Target Start/End: Original strand, 35800476 - 35800533
Alignment:
Q  303 ggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    |||||||| ||||||||||||| |||||||||| ||||||| ||||||||| ||||||    
T  35800476 ggtgcccttctgatttggttctgaagtctggtgaaccgatcgcttttgattcgagatc 35800533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 21387321 - 21387241
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    ||||||||| | |||||| ||||  | |||| |||||||||| ||  ||||||||||||||||||||||||||| ||||||    
T  21387321 tctctggtggatcgggggtgaggaatacccttctgatttggtgctggagtctggtggaccgatcacttttgattcgagatc 21387241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 588
Target Start/End: Original strand, 2825978 - 2826084
Alignment:
Q  481 tttattttgagggttgctctttggaggtaagtagcgacgatgagt-gttgtggatactgtgttttcagtgttttgtttctattaaggtgtccgtcttagg 579  Q
    ||||||||||||| || ||| ||| ||| ||||| ||||||| |  ||||||||||||| |||| ||| |||| |||||| |||||||||  ||||||||    
T  2825978 tttattttgaggggtgttctctgg-ggtgagtagtgacgatgggacgttgtggatactgcgtttacagggttt-gtttctgttaaggtgtttgtcttagg 2826075  T
Q  580 tgatgatgt 588  Q
    |||||||||    
T  2826076 tgatgatgt 2826084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 22811504 - 22811416
Alignment:
Q  195 tagctcttgttt-catttttg-ggttgttaaggtgtttagggtgtttggaggatgcgtgt-ccgttgcgatgagccttttccttttgat 280  Q
    |||||||||||| | |||||| |||||||||||||||||||| |||||||||| ||| || ||||||   | |||||||||||||||||    
T  22811504 tagctcttgtttgcttttttgtggttgttaaggtgtttagggagtttggaggaagcgggtcccgttgatctaagccttttccttttgat 22811416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 19311451 - 19311381
Alignment:
Q  287 tgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgaga 358  Q
    |||| |||||| |||||||| ||| ||||||||||| ||| |||||||||  ||||||||||||||| ||||    
T  19311451 tgtaacgggggtgaggggtgtccttctgatttggttttaa-gtctggtgggtcgatcacttttgattcgaga 19311381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 369
Target Start/End: Complemental strand, 36962713 - 36962643
Alignment:
Q  299 gaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcag 369  Q
    ||||||| || | ||||||||||| |  |||||||||| ||||| |||||||||| ||||||| |||||||    
T  36962713 gaggggtaccttactgatttggttttggagtctggtgggccgattacttttgattcgagatcaggagtcag 36962643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 39041344 - 39041302
Alignment:
Q  327 agtctggtggaccgatcacttttgatttgagatcaagagtcag 369  Q
    |||||||||| |||||||||||||||| ||||||| |||||||    
T  39041344 agtctggtgggccgatcacttttgattcgagatcaggagtcag 39041302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 39421111 - 39421050
Alignment:
Q  299 gaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    |||||||||||| ||||| ||||  || || ||||||| |||||||||||||||| ||||||    
T  39421111 gaggggtgcccttctgatatggtcttatagcctggtgggccgatcacttttgattcgagatc 39421050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 440
Target Start/End: Original strand, 29087445 - 29087603
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||| ||||||||||||||||||||| |||||  ||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||| ||||||  |    
T  29087445 tctctgttgtaccgggggcgaggggtgctctgctattttggttctaaagtctggtggactgatcccttttgattcgagatcaggagtcagttctttg--a 29087542  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
    || || ||||||| | |||||||||||||||||||||||||||||||||||| | ||||||    
T  29087543 atcaaattggtttctgggcttttgttttgtgctctttcggtggatcggaggtcgcgaggtt 29087603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 280 - 440
Target Start/End: Original strand, 34378062 - 34378219
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||  ||||||| |||||| ||    
T  34378062 tctctggtgtaccgggggcaaggagtgccctgctaatttggtactaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgaca 34378161  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
       |||||||||||| ||| |||||||||||||||||||||||| ||||||| | ||||||    
T  34378162 --caagttggtttttgggc-tttgttttgtgctctttcggtggaccggaggtcgcgaggtt 34378219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 280 - 440
Target Start/End: Original strand, 698325 - 698482
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||||| ||||||  |||||| |||||||  |    
T  698325 tctctggtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtggaccgatctcttttgattcgagatcgggagtcaactctttg--a 698422  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | |||||||||||| ||| ||||| |||| ||||||| |||| || ||||||| ||||||    
T  698423 ctcaagttggtttttgggc-tttgtgttgtactctttctgtggttcagaggttgcgaggtt 698482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 280 - 379
Target Start/End: Complemental strand, 7392148 - 7392049
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||| ||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||  ||||||| |||||||||    
T  7392148 tctctgatgtaccgagggtgaggggtgcccttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcgggagtcagttctttggca 7392049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 114 - 254
Target Start/End: Original strand, 29087204 - 29087346
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt--tcattt 211  Q
    |||||| ||||||||||||||| |||||||||||||  | ||||  || ||| ||||||| ||||||||| |||||||| ||||||||||||  |  |||    
T  29087204 tttaggcgaggaggcaggtgttggttggggtgattttctatggaagcaacctctgttacatgggtccatgttcgtcgtcactagctcttgtttgtgtttt 29087303  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    |||||| ||| ||||||||| || |||||||||||||||||||    
T  29087304 ttgggtggtttaggtgtttacggagtttggaggatgcgtgtcc 29087346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 109 - 245
Target Start/End: Complemental strand, 26046395 - 26046256
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttggggt-gatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt- 206  Q
    |||| |||||||||| |||| ||||||||||||||| |||||||||||||||| |||| |||||| ||||||| || ||||| || |||||||||||||     
T  26046395 tgttgtttaggtgagtaggcgggtgtttgttggggttgatttcttttggagactgcctctgttactcgggtccttgttcgtcttcactagctcttgtttg 26046296  T
Q  207 catttttgggttg-ttaaggtgtttagggtgtttggagga 245  Q
      |||||||| || || ||||||||||||||||| |||||    
T  26046295 tgtttttggggtgttttaggtgtttagggtgtttagagga 26046256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 109 - 254
Target Start/End: Complemental strand, 7195672 - 7195523
Alignment:
Q  109 tgttatttaggtgaggaggcaggtgtttgttgg-ggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt- 206  Q
    |||| |||| |||||||||||||||||| |||  |||||||||||||  |||| || | |||||| ||||||| || | || ||| |||||||||||||     
T  7195672 tgttgtttacgtgaggaggcaggtgtttattgtaggtgatttcttttatagactgcttatgttactcgggtccttgtttgttgtcactagctcttgttta 7195573  T
Q  207 catt--tttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||  |||||||| |||||||||||||||||||||||||| ||||||||    
T  7195572 cattgttttgggttattaaggtgtttagggtgtttggaggaagcgtgtcc 7195523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 24072659 - 24072546
Alignment:
Q  141 gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttg 240  Q
    |||||||||||||| ||| | |||| |||||  |||||||||  |||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||     
T  24072659 gggtgatttcttttagaggccgcctctgttattcgggtccatattcgttgtcgctagctcttgtttaagttttgggttgttaaggtgtttagggtgcttt 24072560  T
Q  241 gaggatgcgtgtcc 254  Q
     ||| |||||||||    
T  24072559 aagggtgcgtgtcc 24072546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 280 - 431
Target Start/End: Original strand, 18593207 - 18593355
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||| |||||||||||||||||| ||||||||| ||||||| ||| ||| | |||| | |||||||||||||| ||||||  |||| || ||||||  |    
T  18593207 tctctcgtgtaccgggggcgagggatgccctgctaatttggtgctatagtttagtgggcagatcacttttgattcgagatcgggagttagttctttg--a 18593304  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggt 431  Q
     | |||||||||||| ||| || || ||||||||||||||||| ||||||||    
T  18593305 ctcaagttggtttttgggc-ttagtgttgtgctctttcggtggttcggaggt 18593355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 33258999 - 33258902
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg 377  Q
    ||||||||||||||  || |||||||| ||| ||| |||||| |||||||||||||| |||||||||||||||| ||||||| |||| || |||||||    
T  33258999 tctctggtgtaccgaaggtgaggggtgtccttctgttttggtgctaaagtctggtgggccgatcacttttgattcgagatcaggagttagttctttgg 33258902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 44 - 244
Target Start/End: Complemental strand, 13954728 - 13954525
Alignment:
Q  44 ttttttggactcggatttggtatctgaacggttgacggatgagagctacatttgggggtgg-tagatgttatttaggtgaggaggcaggtgtttgttggg 142  Q
    |||||| |||||||||||||| || ||||||||   ||| | |||||| |||  ||||||| ||| |||| ||||||||||||| | |||||||||||||    
T  13954728 tttttttgactcggatttggtgtcggaacggtttgtggacgggagctatattacggggtggctag-tgttgtttaggtgaggagacgggtgtttgttggg 13954630  T
Q  143 g-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgttt-catttttgg-gttgttaaggtgtttagggtgttt 239  Q
    | ||||||| | |||||   || |||||||  | ||||  || |||||||| ||||||||||||| | ||| ||| ||||||||||||||||||||||||    
T  13954629 ggtgatttcctctggaggttgcgtttgttattcaggtctttgttcgtcgtcactagctcttgtttgcgtttctggagttgttaaggtgtttagggtgttt 13954530  T
Q  240 ggagg 244  Q
    |||||    
T  13954529 ggagg 13954525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 280 - 454
Target Start/End: Complemental strand, 14302547 - 14302377
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    ||||||||||| || ||| ||||| |||||| ||| |||||| |||||||||||||||| ||||||||||| || |||||   ||||||| |||||||      
T  14302547 tctctggtgtatcgagggtgagggatgcccttctgttttggtcctaaagtctggtggactgatcacttttggttcgagattgggagtcagttctttgg-- 14302450  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatg 454  Q
    |  ||||| | |||| ||||||  || ||   |||||||||||||||||||| ||||||| |||||| |||||||    
T  14302449 agcaagtttggttttgggcttt--ttatggtttctttcggtggatcggaggtcgagaggtggtggaagctgcatg 14302377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 13954350 - 13954271
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    ||||||||||||||  || |||||||||| | |||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  13954350 tctctggtgtaccgaaggtgaggggtgcctt-ctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatc 13954271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 378
Target Start/End: Complemental strand, 7195355 - 7195258
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    ||||||||||||| |||  |||||||||||| |||||||||   ||||||||||||  |||||||||||||||| ||||||  ||||||| ||||||||    
T  7195355 tctctggtgtaccagggt-gaggggtgcccttctgatttggccataaagtctggtgagccgatcacttttgattcgagatcgggagtcagttctttggc 7195258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 7162333 - 7162270
Alignment:
Q  383 aagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaa 446  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||| | |||||| |||||    
T  7162333 aagttggtttttgggtttttgttttgtgctctttcgatggatcggaggtcgcgaggttatggaa 7162270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 378
Target Start/End: Original strand, 8297432 - 8297530
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    ||||| |||||||| ||| |||||||||||| |||||||||||||||||  |||||| |  || | |||||||| ||||||  ||||||| ||||||||    
T  8297432 tctctagtgtaccgagggtgaggggtgcccttctgatttggttctaaagcatggtgggctaataatttttgattcgagatcgggagtcagttctttggc 8297530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 24072383 - 24072286
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg 377  Q
    ||||||||| |||| |||   |||||||||| |||||||||| |||||||||||| | | |||| ||||||||||||||||   |||||| |||||||    
T  24072383 tctctggtggaccgagggtttggggtgcccttctgatttggtcctaaagtctggttggctgatcgcttttgatttgagatcggaagtcagttctttgg 24072286  T

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Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 31721641 - 31721730
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcag 369  Q
    ||||||||| ||||||||  ||||||||||| ||||| ||||||| ||||||  ||| |||||| ||||||||| ||||||  |||||||    
T  31721641 tctctggtggaccgggggtaaggggtgcccttctgatgtggttctgaagtctaatgggccgatcgcttttgattcgagatcgggagtcag 31721730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 319 - 378
Target Start/End: Complemental strand, 22675402 - 22675343
Alignment:
Q  319 ggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    |||||||||||||||||||||||||  |||||||| ||||||  ||||||| ||||||||    
T  22675402 ggttctaaagtctggtggaccgatcgattttgattcgagatcgggagtcagttctttggc 22675343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 282 - 375
Target Start/End: Original strand, 25991973 - 25992066
Alignment:
Q  282 tctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctcttt 375  Q
    ||||||||||||  |  |||| ||||||| ||  |||||| |||||||||||||| || ||| ||||||||| |||||| |||||||| |||||    
T  25991973 tctggtgtaccgaagatgaggagtgcccttctattttggtgctaaagtctggtgggccaatcgcttttgattcgagatcgagagtcagttcttt 25992066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 26046045 - 26046001
Alignment:
Q  316 tttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||    
T  26046045 tttggtcctaaagtctggtgaaccgatcacttttgattcgagatc 26046001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 8730649 - 8730711
Alignment:
Q  174 cgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtg 236  Q
    |||||||||  |||| | ||||| ||||||||| | ||||| |||||||||||||||||||||    
T  8730649 cgggtccattttcgttgacgctacctcttgtttgagttttgagttgttaaggtgtttagggtg 8730711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 369
Target Start/End: Complemental strand, 28765700 - 28765630
Alignment:
Q  299 gaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcag 369  Q
    ||||||||||||  ||||||  ||||| | |||||||||  |||||||||||||| |||||| ||||||||    
T  28765700 gaggggtgccctaatgatttttttctagattctggtggattgatcacttttgattcgagatcgagagtcag 28765630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 25341709 - 25341741
Alignment:
Q  327 agtctggtggaccgatcacttttgatttgagat 359  Q
    |||||||||| ||||||||||||||||||||||    
T  25341709 agtctggtgggccgatcacttttgatttgagat 25341741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 27712819 - 27712871
Alignment:
Q  185 tcgtcgtcgctagctcttgtttca-tttttgggttgttaaggtgtttagggtg 236  Q
    |||| ||||||| ||||||||||| ||||||||| | ||||||||||||||||    
T  27712819 tcgttgtcgctacctcttgtttcagtttttgggtggctaaggtgtttagggtg 27712871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 114 - 280
Target Start/End: Complemental strand, 16510718 - 16510549
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttc--attt 211  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||  | ||| | ||||||||||||||| |||||||| ||||||||||||||   |||    
T  16510718 tttaagtgaggaggcgggtgtttgttggggtgatttcctttggaggaaacctctcttacacgggtccatgttcgtcgtcactagctcttgtttctgcttt 16510619  T
Q  212 ttgggttgttaaggtgtttagggtgtttggaggatgcgtg-tccgttgcgatgagccttttccttttgat 280  Q
    | |||| ||| ||||||||| || ||||||||| |||||| ||||||| | |||||||||||||||||||    
T  16510618 tcgggtggtttaggtgtttatggagtttggagggtgcgtgttccgttgtgttgagccttttccttttgat 16510549  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 119 - 254
Target Start/End: Complemental strand, 20702225 - 20702086
Alignment:
Q  119 gtgaggaggcaggtgtttgttgggg-tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgt-ttcattttt--g 214  Q
    |||||||||| |||||||||||||| |||||||||||||||  |||||||||||| ||||||| || |||||||| |||| |||||| | |||||||  |    
T  20702225 gtgaggaggcgggtgtttgttgggggtgatttcttttggaggtagcctttgttactcgggtccttgttcgtcgtcactagttcttgtatgcattttttgg 20702126  T
Q  215 ggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    | ||||||||||||||||||||||||||||| ||| ||||    
T  20702125 gattgttaaggtgtttagggtgtttggaggaagcgggtcc 20702086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 280 - 375
Target Start/End: Complemental strand, 16510418 - 16510323
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctcttt 375  Q
    |||||||||||||| |||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||| |||||  |||||||| |||||    
T  16510418 tctctggtgtaccgagggcaaggggtgccctgctaatttggttctaaagtctagtgggccgatcacttttgattcgagattgagagtcagttcttt 16510323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 280 - 440
Target Start/End: Original strand, 3117457 - 3117614
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||| ||||||||||||||||||||||| ||||| |  || ||| |||||| ||||||||||||||||  |||||  ||||||| ||||||  |    
T  3117457 tctctggtgttccgggggcgaggggtgccctgctaatttgttgatatagtatggtgggccgatcacttttgattcaagatcgggagtcagttctttg--a 3117554  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggtt 440  Q
     | |||||||||||| ||| ||||| |||||||||||  |||| |||||||| | ||||||    
T  3117555 ctcaagttggtttttgggc-tttgtgttgtgctctttatgtggttcggaggtcgcgaggtt 3117614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 280 - 446
Target Start/End: Complemental strand, 20701920 - 20701758
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||| |||||||||||| ||||||||||  |  || ||||||  |||||||||||||||| ||||||  |||| || ||||||||     
T  20701920 tctctggtgtaccgggggtgaggggtgcccttctgatttggtcatttagactggtgtgccgatcacttttgattcgagatcgggagttagttctttggc- 20701822  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaa 446  Q
     ||||||| | |||| ||||||  || ||   |||||||||||||||||||| ||||||| ||||||    
T  20701821 -ttaagtttggttttgggcttt--ttatggtttctttcggtggatcggaggtcgagaggtagtggaa 20701758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 115 - 254
Target Start/End: Original strand, 12793776 - 12793916
Alignment:
Q  115 ttaggtgaggaggcaggtgtttgttg-gggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcattttt 213  Q
    ||||||||||||   |||| |||||| ||||||||||| ||||||   ||||||||||  |||||||||  |||| ||| ||||||||||||| | || |    
T  12793776 ttaggtgaggagaggggtgattgttgtgggtgatttctattggaggtcgcctttgttattcgggtccatactcgttgtccctagctcttgtttaagttgt 12793875  T
Q  214 gggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||||||||||||||| |||||||| |||| || ||||||    
T  12793876 gggttgttaaggtgttttgggtgttttgagggtgtgtgtcc 12793916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 3880700 - 3880627
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatt 353  Q
    |||||||| ||||| ||| ||| |||||||| |||||||||| ||||||| |||||| ||||||||||||||||    
T  3880700 tctctggtttaccgagggtgagaggtgcccttctgatttggtcctaaagtttggtgggccgatcacttttgatt 3880627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 15132640 - 15132585
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtg 335  Q
    |||||| ||||| ||||||||||||||||||| |||||| ||||||||||||||||    
T  15132640 tctctgatgtactgggggcgaggggtgccctgttgattttgttctaaagtctggtg 15132585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 32935444 - 32935362
Alignment:
Q  292 cgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctt 374  Q
    |||||| ||||||| |||| |||||||||| || ||||||||||| |||||| ||||||||| ||||||  ||||||| ||||    
T  32935444 cgggggtgaggggttcccttctgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctt 32935362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 280
Target Start/End: Complemental strand, 15132947 - 15132778
Alignment:
Q  114 tttaggtgaggaggcaggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtt-tcatttt 212  Q
    |||||||||| |||  |||||||||||||| |||||  ||| |||||||||| |   |||||| |||| | |||||||| |||| |||| ||   |||||    
T  15132947 tttaggtgagcaggtgggtgtttgttggggagattttctttagagacagcctctagcacacggatccacgttcgtcgtcactagttcttattggtatttt 15132848  T
Q  213 tgggttg-ttaaggtgtttagggtg-tttggaggatgcgtgtccgttgcgatgagccttttccttttgat 280  Q
    ||||||| ||||||||||||  | | |||||||| |||||| | |||| ||||||||| |||||||||||    
T  15132847 tgggttgtttaaggtgtttacagagttttggagggtgcgtgcctgttgagatgagcctcttccttttgat 15132778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 12794098 - 12794173
Alignment:
Q  300 aggggtgccctgctgatttggttctaaagtctggtggaccgatc-acttttgatttgagatcaagagtcagctctt 374  Q
    ||||||| ||| ||| |||||||||||||||| |||| |||||| |||||||||| ||||||| ||||||| ||||    
T  12794098 aggggtgtccttctgttttggttctaaagtctagtgggccgatcaacttttgattcgagatcaggagtcagttctt 12794173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 26216112 - 26216042
Alignment:
Q  303 ggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctt 374  Q
    |||||||| |||||||| |||||| ||||||||| |||||||||||||||| ||||||  ||||||| ||||    
T  26216112 ggtgcccttctgatttgattctaa-gtctggtgggccgatcacttttgattcgagatcgggagtcagttctt 26216042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 26534813 - 26534757
Alignment:
Q  303 ggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagat 359  Q
    |||| ||| |||||||||| || ||||||||||| |||||||||||||||| |||||    
T  26534813 ggtggccttctgatttggtcctgaagtctggtgggccgatcacttttgattcgagat 26534757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 13423482 - 13423528
Alignment:
Q  332 ggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    |||||||||||||||||||||| |||||| |||||| | ||||||||    
T  13423482 ggtggaccgatcacttttgattcgagatcgagagtcggttctttggc 13423528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 7546499 - 7546466
Alignment:
Q  327 agtctggtggaccgatcacttttgatttgagatc 360  Q
    ||||||||||||||||||||||||||| ||||||    
T  7546499 agtctggtggaccgatcacttttgattcgagatc 7546466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 377
Target Start/End: Original strand, 9224010 - 9224102
Alignment:
Q  284 tggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg 377  Q
    ||||| |||||||| ||||| ||||||  | | ||||| |||||||||||||| | |||| ||||||||| ||||||  ||||||| |||||||    
T  9224010 tggtggaccgggggtgaggg-tgcccttttaagttggtcctaaagtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttgg 9224102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 369
Target Start/End: Original strand, 34105410 - 34105466
Alignment:
Q  313 tgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcag 369  Q
    ||||||| ||||| ||| |||||| |||||||||||||||| ||||||  |||||||    
T  34105410 tgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtcag 34105466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 280 - 431
Target Start/End: Complemental strand, 35888 - 35741
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggca 379  Q
    |||||||||||||||||||||||||||||  ||| |||||||| || ||||| |||| |||||||||||||||| ||||||  ||||||  ||||||  |    
T  35888 tctctggtgtaccgggggcgaggggtgcctagctaatttggttatatagtctagtgggccgatcacttttgattcgagatcgggagtca-ttctttg--a 35792  T
Q  380 attaagttggttttttggcttttgttttgtgctctttcggtggatcggaggt 431  Q
     |||||||||||||| ||| ||| | ||||||||||||||||||||||||||    
T  35791 cttaagttggtttttgggc-tttatgttgtgctctttcggtggatcggaggt 35741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 36181 - 36028
Alignment:
Q  130 ggtgtttgttggggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcat---ttttgggttgttaaggt 226  Q
    ||||||||||||||||||||| ||| ||  || ||| |||| || |||||||||  ||||||| ||||||||||||| ||   |||||||| ||| ||||    
T  36181 ggtgtttgttggggtgatttcctttagaagcaacctatgtttcaagggtccatgtccgtcgtctctagctcttgttt-atgccttttgggtggtttaggt 36083  T
Q  227 gtttagggtgtttggaggatgcgtgtc-cgttgcgatgagccttttccttttgat 280  Q
    |||||  | ||||| ||| || ||||| ||||| | |||||||||||||||||||    
T  36082 gtttacagagtttgaagggtgagtgtcacgttgtgttgagccttttccttttgat 36028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 244
Target Start/End: Original strand, 57768 - 57981
Alignment:
Q  36 ggtcgtgg-ttttttggactcggatttggtatctgaacggttgacggatgagagctacatttgggggtggtagatgttatttaggtgaggaggcaggtgt 134  Q
    |||||||| ||||||||||| ||||||||| |  ||| ||||  |||| ||||| || ||  ||||||||    |||||||||||||||||||  |||||    
T  57768 ggtcgtggcttttttggacttggatttggtgttggaatggtttgcggacgagagttatataagggggtggcttgtgttatttaggtgaggaggtgggtgt 57867  T
Q  135 ttgttgggg--tgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttca--tttttgggttgttaaggtgttt 230  Q
    |||||||||  || |||||||||||| |  ||| ||| || |  |||| || |||||||| ||||||| |||||    ||||||||||||||||||||||    
T  57868 ttgttggggggtggtttcttttggaggctacctctgtaactcatgtccttgttcgtcgtcactagctcatgtttgcgttttttgggttgttaaggtgttt 57967  T
Q  231 agggtgtttggagg 244  Q
    ||||||||||||||    
T  57968 agggtgtttggagg 57981  T

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Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 58114 - 58164
Alignment:
Q  303 ggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatt 353  Q
    |||||||| | |||||||| ||||||| |||||| ||||||||||||||||    
T  58114 ggtgcccttcagatttggtcctaaagtttggtgggccgatcacttttgatt 58164  T

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Target: scaffold0200 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 446
Target Start/End: Original strand, 19366 - 19509
Alignment:
Q  299 gaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggcaattaagttggttttttggc 398  Q
    |||||||||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||   |||||| ||||||||  | ||||| | |||| |||    
T  19366 gaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggc--tcaagtttggttttgggc 19463  T
Q  399 ttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaa 446  Q
    |||  || ||   |||||||||||||||||||| ||||| | ||||||    
T  19464 ttt--ttatggtttctttcggtggatcggaggtcgagagttggtggaa 19509  T

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Target: scaffold0050 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 36671 - 36767
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttg 376  Q
    |||||||||||||| | | |||||||||||| |||||||||| ||||||||||| || | |||||||||||||| ||||||  ||||||| ||||||    
T  36671 tctctggtgtaccgagagtgaggggtgcccttctgatttggtcctaaagtctggcgggctgatcacttttgattcgagatcgggagtcagttctttg 36767  T

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Target: scaffold0050; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 245
Target Start/End: Original strand, 36340 - 36495
Alignment:
Q  97 gggggtggtagatgttatttaggtgaggaggcaggtgtttgttgg--ggtgatttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgc 194  Q
    ||||||||| | | || |||||||||||||||||||||||  |||  |||||||||||| ||||   |||| |||||| ||||||| || ||||||||      
T  36340 gggggtggttggttttgtttaggtgaggaggcaggtgttttgtgggtggtgatttctttgggaggttgcctctgttactcgggtccttgttcgtcgtcag 36439  T
Q  195 tagctcttgtt----tcatttttgggttgttaaggtg-tttagggtgtttggagga 245  Q
    |||||||||||    |  |||| |||||||||||||| |||||||||||| |||||    
T  36440 tagctcttgttcacgtttttttggggttgttaaggtgttttagggtgtttagagga 36495  T

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Target: scaffold0119 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 42574 - 42432
Alignment:
Q  107 gatgttat-ttaggtgaggaggcaggtgtttgtt-ggggtgatttcttttggagacagcctttgttacacgggtccatg-gtcgtcgtcgctagctcttg 203  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||||| |||||   |||| | |||| ||||||| ||  |||||||| ||||||||||    
T  42574 gatgttatgttaggtgaggaggcgggtgtttgttgggggtgatttcttctggaggttgcctctattactcgggtccttgtttcgtcgtcactagctcttg 42475  T
Q  204 ttt-cattttt-gggttgttaaggtgtttagggtgtttggagg 244  Q
    ||| | ||||| |||||||||| ||||||| ||||||||||||    
T  42474 tttgcgtttttggggttgttaaagtgtttatggtgtttggagg 42432  T

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Target: scaffold0119; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 42236 - 42157
Alignment:
Q  299 gaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttggc 378  Q
    |||||||||||| ||||||| || |||||||||||||| |||||||||||||||| ||||||   |||||| ||||||||    
T  42236 gaggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggc 42157  T

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Target: scaffold0062 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 46784 - 46866
Alignment:
Q  148 ttcttttggagacagcctttgttacacgggtccatggtcgtcgtcgctagctcttgtttcatttttgggttgttaaggtgttt 230  Q
    |||||||| || | |||| |||||  |||||||||   ||||||||||||||||||||| | |||||| ||||||||||||||    
T  46784 ttcttttgaaggccgcctctgttattcgggtccatatccgtcgtcgctagctcttgtttgagttttggattgttaaggtgttt 46866  T

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Target: scaffold0062; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 47057 - 47137
Alignment:
Q  280 tctctggtgtaccgggggcgaggggtgccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatc 360  Q
    ||||||||| |||||||| |||||||||||| |||||| |   || | |||||||| ||| ||||||||||||| ||||||    
T  47057 tctctggtgaaccgggggtgaggggtgcccttctgattagaccctgatgtctggtgaaccaatcacttttgattcgagatc 47137  T

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Target: scaffold0062; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 59349 - 59417
Alignment:
Q  186 cgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||||||||||||||||||| | | |||| |||||||||||||| |||||  | ||| ||||||||||    
T  59349 cgtcgtcgctagctcttgtttgagtattggattgttaaggtgttttgggtgccttgagcatgcgtgtcc 59417  T

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Target: scaffold0062; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 71457 - 71525
Alignment:
Q  186 cgtcgtcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    ||||||||||||||||||||| | | |||| |||||||||||||| ||||| || |||  |||||||||    
T  71457 cgtcgtcgctagctcttgtttgagtattggattgttaaggtgttttgggtgctttgagcgtgcgtgtcc 71525  T

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Target: scaffold1613 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 1359 - 1296
Alignment:
Q  191 tcgctagctcttgtttcatttttgggttgttaaggtgtttagggtgtttggaggatgcgtgtcc 254  Q
    |||||||||||||||| | |||||||| |||||| ||||||||||| || |||| || ||||||    
T  1359 tcgctagctcttgtttgagttttgggtcgttaagatgtttagggtgctttgagggtgtgtgtcc 1296  T

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Target: scaffold1613; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 1107 - 1037
Alignment:
Q  307 ccctgctgatttggttctaaagtctggtggaccgatcacttttgatttgagatcaagagtcagctctttgg 377  Q
    |||| ||||||||||  | ||||||||||| |||||| ||||||||| ||||||  ||||||| |||||||    
T  1107 cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgg 1037  T

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Target: scaffold0343 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 5772 - 5818
Alignment:
Q  385 gttggttttttggcttttgttttgtgctctttcggtggatcggaggt 431  Q
    |||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  5772 gttggtttttgggctttgtttttgtgctctttcggtagatcggaggt 5818  T

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