View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6184_low_41 (Length: 216)
Name: NF6184_low_41
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 40 - 196
Target Start/End: Complemental strand, 1971743 - 1971588
Alignment:
| Q |
40 |
aattaaaaataaacaaaactcaccgcgataaacaaagctccaacagacccaaaagcttccttcagaacaccaaagtacgtcgtggttacaccggcatgtg |
139 |
Q |
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| T |
1971743 |
aattaaaaataaacaaaactcaccgcgataaacaaagctccaacagacccaaaagcttccttcataacaccaaagtacgt-gtggttacaccggcatgcg |
1971645 |
T |
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| Q |
140 |
taaaacgcatgagaaaatcaacagaaacttcagcgagcacatcgaagatatgaatca |
196 |
Q |
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| T |
1971644 |
taaaacgcatgagaaaatcaacagaaacttcagcgagcacatcgatgataagaatca |
1971588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 40 - 196
Target Start/End: Complemental strand, 19962725 - 19962569
Alignment:
| Q |
40 |
aattaaaaataaacaaaactcaccgcgataaacaaagctccaacagacccaaaagcttccttcagaacaccaaagtacgtcgtggttacaccggcatgtg |
139 |
Q |
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| T |
19962725 |
aattaaaaataaacaaaactcaccgtgataaacaaagctccaacagactcaaaagcttccttcataacaccaaagtacgtcgtggttacacgggcatgtg |
19962626 |
T |
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| Q |
140 |
taaaacgcatgagaaaatcaacagaaacttcagcgagcacatcgaagatatgaatca |
196 |
Q |
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| T |
19962625 |
taaaacgcatgagaaaatcaacaaaaacttcagcgagtacatcgacgataagaatca |
19962569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 32395079 - 32394973
Alignment:
| Q |
73 |
aaagctccaacagacccaaaagcttccttcagaacaccaaagtacgtcgtggttacaccggcatgtgtaaaacgcatgagaaaatcaacagaaacttcag |
172 |
Q |
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| T |
32395079 |
aaagctccaacggacccaaaagcttccttcataacaccagagtatgtcgtggttacaccagcatgtgtaaaacgcatgagaaaatcaacagaaacttcgg |
32394980 |
T |
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| Q |
173 |
cgagcac |
179 |
Q |
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||||||| |
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| T |
32394979 |
cgagcac |
32394973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 32393016 - 32392913
Alignment:
| Q |
77 |
ctccaacagacccaaaagcttccttcagaacaccaaagtacgtcgtggttacaccggcatgtgtaaaacgcatgagaaaatcaacagaaacttcagcgag |
176 |
Q |
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|||||||||| |||||||||||| ||| |||| | ||||| || ||||||| || | ||||||||||||||||||||| || ||||||||||| || |
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| T |
32393016 |
ctccaacagatccaaaagcttccctcatcacactagcatacgttgtctttacacctgcttctgtaaaacgcatgagaaaatccactgaaacttcagcaag |
32392917 |
T |
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| Q |
177 |
caca |
180 |
Q |
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|||| |
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| T |
32392916 |
caca |
32392913 |
T |
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