View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6184_low_7 (Length: 492)
Name: NF6184_low_7
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Original strand, 28921972 - 28922448
Alignment:
| Q |
11 |
catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacatttgaaagaagaaaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28921972 |
catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacatttgaaagaagaaaa |
28922071 |
T |
|
| Q |
111 |
taaatctttcatccacttatagacttaatcatcttactggattgttgcacagtatccccttttagtgaaacaaacagttccttggtgaaggtatcaacat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28922072 |
taaatctttcatccacttatagacttaatcatcttactggattgttgcacagtatccccttttagtgaaacaaacagttccttggtgaaggtatcaacat |
28922171 |
T |
|
| Q |
211 |
gtgataacaactgctcagcaaactctttcttggcaggatcctacnnnnnnntaatactaaaaatcagttttcttaat-aaaaaggtttcaaatttcaaac |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28922172 |
gtgataacaactgctcagcaaactctttcttggcaggatcctacaaaaaaattatactaaaaatcagttttcttaataaaaaaggtttcaaatttcaaac |
28922271 |
T |
|
| Q |
310 |
atgaggtagggcaccaca-------------tgcagtagttgcaattgcaacgtaatcacaattgaccatggtctcatcaaccttaattgacctcacagt |
396 |
Q |
| |
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||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28922272 |
atgagctagggcaccacataaaggtttaggtttcagtagttgcaattgcaacgtaatcacaattgaccatggtctcatcaaccttaattgacctcacagt |
28922371 |
T |
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| Q |
397 |
atcaatgatcacaattcgactgtgatttaaaaccttgcttaacatcaacagtccattgcctgtaaggtgggaactgc |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28922372 |
atcaatgatcacaattcgactgtgatttaaaaccttgcttaacatcaatagtccattgcctgtaaggtgggaactgc |
28922448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 28909406 - 28909645
Alignment:
| Q |
11 |
catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacatttgaaagaagaaaa |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| |||||| ||||| ||||||||||||| | |||||| ||| | | |
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|
| T |
28909406 |
catcatcaaattttccaagagcattctccaagaattcaatagcaggacctgattcaaaataactaattttaaggtctattttataattgaaaaaaggaga |
28909505 |
T |
|
| Q |
111 |
taaatctttcatccacttatagacttaatcatcttactggattgttgcacagtatccccttttagtgaaacaaacagttccttggtgaaggtatcaacat |
210 |
Q |
| |
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|| || || |||| ||||| | ||| |||| ||| |||||| ||||| |||||| |||||| |||| || | || ||||||| |||||||||| |
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| T |
28909506 |
ta---ctctcctccatttataagcataaacatcataccggattgatgcacggtatcctcttttaatgaattgaaaaagtctctggtgaatgtatcaacat |
28909602 |
T |
|
| Q |
211 |
gtgataacaactgctcagcaaactctttcttggcaggatccta |
253 |
Q |
| |
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| |||| ||||| |||| | | ||||||||||||||||||||| |
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| T |
28909603 |
gggatagcaactactcaccgagctctttcttggcaggatccta |
28909645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 28914052 - 28914137
Alignment:
| Q |
13 |
tcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacattt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||| |||||| ||||||||| |||| |
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|
| T |
28914052 |
tcatcaaatttaccaagagcattctccaagaaatcagaagcaggacctgattcaaaataaccattttaaaaatctattttatattt |
28914137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 28909771 - 28909847
Alignment:
| Q |
353 |
tcacaattgaccatggtctcatcaaccttaattgacctcacagtatcaatgatcacaattcgactgtgatttaaaac |
429 |
Q |
| |
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||||||| |||| | ||||||| | ||||||||||||||||| |||||| ||||||||| |||||||||||||||| |
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| T |
28909771 |
tcacaatagaccgtagtctcattagccttaattgacctcacaatatcaaggatcacaatatgactgtgatttaaaac |
28909847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 28914544 - 28914599
Alignment:
| Q |
194 |
ggtgaaggtatcaacatgtgataacaactgctcagcaaactctttcttggcaggat |
249 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||| |
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|
| T |
28914544 |
ggtgaatgtatcaacatgggataacaactgctcaccgaactctttcttggcaggat |
28914599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 40288497 - 40288550
Alignment:
| Q |
11 |
catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgatt |
64 |
Q |
| |
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|||||||||||||||||||||||||||||||| | ||||| | ||||||||||| |
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| T |
40288497 |
catcatcaaatttaccaagagcattctccaagtaatcaaaggcaggacctgatt |
40288550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 40288676 - 40288736
Alignment:
| Q |
192 |
ttggtgaaggtatcaacatgtgataacaactgctcagcaaactctttcttggcaggatcct |
252 |
Q |
| |
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|||||||| ||||||||||| || | |||||| ||| ||||||||||||| |||||||||| |
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| T |
40288676 |
ttggtgaatgtatcaacatgagaaatcaactgatcaccaaactctttctttgcaggatcct |
40288736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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