View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6184_low_8 (Length: 483)
Name: NF6184_low_8
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6184_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 47591276 - 47591601
Alignment:
| Q |
5 |
tgaaatgaaaggacagtactattatgttgttgagtctcatatatggaatcatggtaattggtaattctgctatgtatgtataatatctctttctcttcac |
104 |
Q |
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| T |
47591276 |
tgaaatgaaaggacagcactattatgttgttgagtctcatatatggaatcatggtaattggtaattctgctatgtatgtataatatctctttctcttcac |
47591375 |
T |
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| Q |
105 |
ttgattctctctctcaatcactcacccaatgcagtttactacactaactgacactgtagtacacatgcacacaaagccaactggcaaatattgatttcat |
204 |
Q |
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| T |
47591376 |
ttgattctctctctcaatcactcactcaatgcagtttactacactaactgacactgtagtacacatgcacacaaagccaactggcaaatattgatttcat |
47591475 |
T |
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| Q |
205 |
tcacataaagataaaataagaaggcgaaaggagtgagtaaagggacaaacagtttacaaattctagtgttattcgtttgtttctctctctctttttgcca |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47591476 |
tcacataaagataaaataagaaggcgaaaggagtgagtaaagggacaaacagtttacaaattctagtgtgattcgtttgtttctctctctctttttgcct |
47591575 |
T |
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| Q |
305 |
ctttatgttatgttaaatgttaatca |
330 |
Q |
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| T |
47591576 |
ctttatgttatgttaaatgttaatca |
47591601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 398 - 465
Target Start/End: Original strand, 47591669 - 47591736
Alignment:
| Q |
398 |
aaaacaaacacattaacaagcataagagaaagaaagaaaaagaaactctagttctataggtcctttac |
465 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47591669 |
aaaacaaacacattaacaagcataagagaaagaaaaaaaaagaaactctagttctataggtcctttac |
47591736 |
T |
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