View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6184_low_9 (Length: 474)

Name: NF6184_low_9
Description: NF6184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6184_low_9
NF6184_low_9
[»] chr2 (3 HSPs)
chr2 (1-464)||(37844479-37844943)
chr2 (56-97)||(33197360-33197401)
chr2 (51-103)||(28803621-28803673)
[»] chr7 (2 HSPs)
chr7 (51-109)||(1431417-1431475)
chr7 (53-97)||(27481415-27481459)
[»] chr8 (4 HSPs)
chr8 (100-134)||(10923604-10923638)
chr8 (51-83)||(6950239-6950271)
chr8 (100-140)||(26473780-26473820)
chr8 (57-97)||(31875680-31875720)
[»] chr5 (2 HSPs)
chr5 (51-97)||(20982256-20982302)
chr5 (51-103)||(6739775-6739827)
[»] chr4 (2 HSPs)
chr4 (49-103)||(24936212-24936265)
chr4 (56-104)||(24193493-24193541)
[»] chr3 (1 HSPs)
chr3 (55-97)||(29094288-29094330)
[»] chr1 (2 HSPs)
chr1 (51-96)||(24263261-24263306)
chr1 (100-141)||(25479582-25479623)


Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 37844943 - 37844479
Alignment:
Q  1 atggtggaagcttgagaaggaatttatttcactcttccaaacagtatctgaagtgcttatagcataaaagcttatcatataagtgtttatctataagtca 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844943 atggtggaagcttgagaaggaatttatttcactctttcaaacagtatcttaagtgcttatagcataaaagcttatcatataagtgtttatctataagtca 37844844  T
Q  101 ttttcataagctctctagaatagctaatgaaaacgacttat---ggagacacactaaccagtttgcaattgaacacttacctttaatccttgtgtaagag 197  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844843 ttttcataagctctctagaatagctaatgaaaacgacttataatggagacacactaaccagtttgcaattgaacacttacctttaatccttgtgtaagag 37844744  T
Q  198 tacggtcaccgggtccatgtgactttagccattctgctgcaaccacatcattgccaacggcatcctttgctacggtaccaccagtggaagaacctgagct 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844743 tacggtcaccgggtccatgtgactttagccattctgctgcaaccacatcattgccaacggcatcctttgctacggtaccaccagtggaagaacctgagct 37844644  T
Q  298 gtaattgttttccgagactggttaataatttggtagacgaaggaactgagtttgaagaatcataaaacttttggatagcaaatgcaacatataattagca 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844643 gtaattgttttccgagactggttaataatttggtagacgaaggaactgagtttgaagaatcataaaacttttggatagcaaatgcaacatataattagca 37844544  T
Q  398 atatggtagactactaatagttttcttctttgatacatcaaacttatacaatatgttatagcctttg 464  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844543 atatggtagactac--atagttttcttctttgatacatcaaacttatacaatatgttatagcctttg 37844479  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 33197401 - 33197360
Alignment:
Q  56 cttatagcataaaagcttatcatataagtgtttatctataag 97  Q
    |||||| |||||| |||||||||||||||| |||||||||||    
T  33197401 cttataacataaacgcttatcatataagtgcttatctataag 33197360  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 28803673 - 28803621
Alignment:
Q  51 aagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattt 103  Q
    ||||| |||| ||||||| |||||||||||||||| |||| ||||||| ||||    
T  28803673 aagtgtttatggcataaatgcttatcatataagtgcttatatataagttattt 28803621  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 1431475 - 1431417
Alignment:
Q  51 aagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattttcataa 109  Q
    |||| ||||||||||||  ||||||||||||||||||||| ||||||| |||| |||||    
T  1431475 aagttcttatagcataagtgcttatcatataagtgtttatgtataagttatttccataa 1431417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 27481459 - 27481415
Alignment:
Q  53 gtgcttatagcataaaagcttatcatataagtgtttatctataag 97  Q
    |||||||||||||||| | |||| |||||||||||||| ||||||    
T  27481459 gtgcttatagcataaatgtttattatataagtgtttatgtataag 27481415  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 10923638 - 10923604
Alignment:
Q  100 attttcataagctctctagaatagctaatgaaaac 134  Q
    |||||||||||||||| ||||||||||||||||||    
T  10923638 attttcataagctctccagaatagctaatgaaaac 10923604  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 6950239 - 6950271
Alignment:
Q  51 aagtgcttatagcataaaagcttatcatataag 83  Q
    |||||||||||||||||| ||||||||||||||    
T  6950239 aagtgcttatagcataaacgcttatcatataag 6950271  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 26473780 - 26473820
Alignment:
Q  100 attttcataagctctctagaatagctaatgaaaacgactta 140  Q
    ||||||||||||||||||| |||||| |||||||| |||||    
T  26473780 attttcataagctctctaggatagcttatgaaaacaactta 26473820  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 31875720 - 31875680
Alignment:
Q  57 ttatagcataaaagcttatcatataagtgtttatctataag 97  Q
    |||||||||||  |||||||||||||||| |||||||||||    
T  31875720 ttatagcataagcgcttatcatataagtgcttatctataag 31875680  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 20982302 - 20982256
Alignment:
Q  51 aagtgcttatagcataaaagcttatcatataagtgtttatctataag 97  Q
    |||||||||||||||||  |||||||||||||||| |||| ||||||    
T  20982302 aagtgcttatagcataagtgcttatcatataagtgcttatgtataag 20982256  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 6739775 - 6739827
Alignment:
Q  51 aagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattt 103  Q
    ||||||||||| |||||  | |||||||||||| |||||| ||||||||||||    
T  6739775 aagtgcttatatcataagcgtttatcatataagcgtttatgtataagtcattt 6739827  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 24936212 - 24936265
Alignment:
Q  49 tgaagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattt 103  Q
    |||||||||||||||||||| |||||| ||||||||| |||| ||||||| ||||    
T  24936212 tgaagtgcttatagcataaaggcttat-atataagtggttatgtataagttattt 24936265  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 24193493 - 24193541
Alignment:
Q  56 cttatagcataaaagcttatcatataagtgtttatctataagtcatttt 104  Q
    ||||||||||||| |||||||||||||||  |||| ||||||| |||||    
T  24193493 cttatagcataaacgcttatcatataagtacttatgtataagttatttt 24193541  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 29094288 - 29094330
Alignment:
Q  55 gcttatagcataaaagcttatcatataagtgtttatctataag 97  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  29094288 gcttatagcataaacacttatcatataagtgtttatgtataag 29094330  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 24263306 - 24263261
Alignment:
Q  51 aagtgcttatagcataaaagcttatcatataagtgtttatctataa 96  Q
    |||||||||||||||||| | ||| ||||||||||||||| |||||    
T  24263306 aagtgcttatagcataaacgtttagcatataagtgtttatgtataa 24263261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 25479623 - 25479582
Alignment:
Q  100 attttcataagctctctagaatagctaatgaaaacgacttat 141  Q
    ||||||||||||||||||| |||||| |||||||| ||||||    
T  25479623 attttcataagctctctaggatagcttatgaaaacaacttat 25479582  T

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