View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6185_high_13 (Length: 236)

Name: NF6185_high_13
Description: NF6185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6185_high_13
NF6185_high_13
[»] chr1 (18 HSPs)
chr1 (118-220)||(31869690-31869792)
chr1 (173-220)||(44596613-44596660)
chr1 (179-220)||(15306589-15306630)
chr1 (179-218)||(12224578-12224617)
chr1 (173-215)||(29677516-29677558)
chr1 (55-91)||(31869807-31869843)
chr1 (182-215)||(7956425-7956458)
chr1 (179-220)||(20903952-20903993)
chr1 (170-215)||(36419202-36419247)
chr1 (179-212)||(38061181-38061214)
chr1 (174-215)||(39802765-39802806)
chr1 (180-220)||(3577767-3577807)
chr1 (179-215)||(6413340-6413376)
chr1 (179-215)||(7702936-7702972)
chr1 (179-215)||(24469820-24469856)
chr1 (179-215)||(24576010-24576046)
chr1 (183-215)||(28006451-28006483)
chr1 (179-215)||(32179959-32179995)
[»] chr3 (11 HSPs)
chr3 (173-220)||(9505118-9505165)
chr3 (179-215)||(12710803-12710839)
chr3 (174-218)||(19560772-19560816)
chr3 (179-215)||(54432180-54432216)
chr3 (181-220)||(52934908-52934947)
chr3 (179-213)||(26049543-26049577)
chr3 (182-220)||(28242679-28242717)
chr3 (179-220)||(25253798-25253839)
chr3 (186-214)||(1674731-1674759)
chr3 (179-215)||(23206311-23206347)
chr3 (179-215)||(40943662-40943698)
[»] chr8 (4 HSPs)
chr8 (179-220)||(3308030-3308071)
chr8 (174-215)||(39478151-39478192)
chr8 (186-220)||(32740735-32740769)
chr8 (179-215)||(453584-453620)
[»] chr4 (18 HSPs)
chr4 (179-220)||(11055229-11055270)
chr4 (173-213)||(43387360-43387400)
chr4 (179-218)||(38791789-38791828)
chr4 (179-213)||(22184606-22184640)
chr4 (179-220)||(9959427-9959468)
chr4 (179-220)||(4274559-4274600)
chr4 (182-215)||(9222138-9222171)
chr4 (182-215)||(12673034-12673067)
chr4 (183-220)||(26633032-26633069)
chr4 (179-220)||(27891482-27891523)
chr4 (174-215)||(28265671-28265712)
chr4 (179-220)||(48802478-48802519)
chr4 (182-215)||(51995179-51995212)
chr4 (179-215)||(80598-80634)
chr4 (179-215)||(12789555-12789591)
chr4 (179-215)||(45674936-45674972)
chr4 (185-213)||(52813704-52813732)
chr4 (179-215)||(53369973-53370009)
[»] chr2 (6 HSPs)
chr2 (179-220)||(3409191-3409232)
chr2 (179-213)||(44740486-44740520)
chr2 (181-218)||(40680307-40680344)
chr2 (179-215)||(27464575-27464611)
chr2 (179-215)||(27634772-27634808)
chr2 (179-215)||(33831596-33831632)
[»] chr7 (17 HSPs)
chr7 (179-213)||(222229-222263)
chr7 (130-168)||(24928964-24929002)
chr7 (179-213)||(33124803-33124837)
chr7 (179-214)||(18249996-18250031)
chr7 (179-213)||(22075171-22075205)
chr7 (179-213)||(33935616-33935650)
chr7 (179-213)||(44421904-44421938)
chr7 (174-215)||(665845-665886)
chr7 (170-215)||(5794930-5794975)
chr7 (173-214)||(15434312-15434353)
chr7 (174-215)||(18740216-18740257)
chr7 (179-220)||(23227002-23227043)
chr7 (179-220)||(23236155-23236196)
chr7 (179-220)||(33171537-33171578)
chr7 (179-220)||(41449841-41449882)
chr7 (179-215)||(33898947-33898983)
chr7 (179-215)||(36927105-36927141)
[»] chr5 (10 HSPs)
chr5 (182-220)||(1840693-1840731)
chr5 (186-220)||(39414278-39414312)
chr5 (179-212)||(19716282-19716315)
chr5 (179-212)||(27450584-27450617)
chr5 (179-220)||(32945024-32945065)
chr5 (179-215)||(3801367-3801403)
chr5 (179-215)||(15933264-15933300)
chr5 (179-215)||(27196178-27196214)
chr5 (179-215)||(27906199-27906235)
chr5 (179-215)||(38522864-38522900)
[»] chr6 (4 HSPs)
chr6 (183-220)||(4441308-4441345)
chr6 (179-215)||(13312125-13312161)
chr6 (179-220)||(1501944-1501985)
chr6 (174-215)||(3081716-3081757)
[»] scaffold0135 (1 HSPs)
scaffold0135 (182-215)||(32791-32824)
[»] scaffold0316 (1 HSPs)
scaffold0316 (179-215)||(19397-19433)
[»] scaffold0171 (1 HSPs)
scaffold0171 (179-215)||(21188-21224)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 31869792 - 31869690
Alignment:
Q  118 aacaccttccatgatcaacaaaacaaataaaaatcaacactttgaacaaccctttaagtacggctggcaatgaaccgaaccaactcgacaatagttcgga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| | ||||||||||||| || ||||||||||||||||    
T  31869792 aacaccttccatgatcaacaaaacaaataaaaatcaacactttgaacgaccttttaagtagggccgacaatgaaccgaactaattcgacaatagttcgga 31869693  T
Q  218 act 220  Q
    |||    
T  31869692 act 31869690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 44596660 - 44596613
Alignment:
Q  173 aagtacggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  44596660 aagtagggctggcaatgaaccgaaccaactcgacaatagtttggaact 44596613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 15306630 - 15306589
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  15306630 ggctggcaatgaaccgaaccaacttgacaatagttcggaact 15306589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 12224578 - 12224617
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaa 218  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  12224578 ggctgacaatgaaccgaaccaactcgacaatagttcggaa 12224617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 29677516 - 29677558
Alignment:
Q  173 aagtacggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    ||||| ||||||||||||||||||||||||||| |||||||||    
T  29677516 aagtagggctggcaatgaaccgaaccaactcgaaaatagttcg 29677558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 31869843 - 31869807
Alignment:
Q  55 aggaacaaagcaagcttcgtctctttccttcataacc 91  Q
    ||||||||||||||||||||||||||||||||| |||    
T  31869843 aggaacaaagcaagcttcgtctctttccttcatcacc 31869807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 7956458 - 7956425
Alignment:
Q  182 tggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||| |||||||||    
T  7956458 tggcaatgaaccgaaccaactcgaaaatagttcg 7956425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 20903952 - 20903993
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    |||||| ||||||||||| |||||||||||||||| ||||||    
T  20903952 ggctggaaatgaaccgaatcaactcgacaatagtttggaact 20903993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 36419247 - 36419202
Alignment:
Q  170 tttaagtacggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    ||||| || |||||||||||||||||||||||||||  ||||||||    
T  36419247 tttaattagggctggcaatgaaccgaaccaactcgattatagttcg 36419202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 38061181 - 38061214
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagt 212  Q
    ||||||||||||||||||||||||||| ||||||    
T  38061181 ggctggcaatgaaccgaaccaactcgaaaatagt 38061214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 39802765 - 39802806
Alignment:
Q  174 agtacggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||| ||||||||||||| ||||||||||||| |||||||||    
T  39802765 agtagggctggcaatgaatcgaaccaactcgaaaatagttcg 39802806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 3577807 - 3577767
Alignment:
Q  180 gctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    |||| ||||||||||||| ||||||||||||||| ||||||    
T  3577807 gctgacaatgaaccgaactaactcgacaatagtttggaact 3577767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 6413376 - 6413340
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  6413376 ggctggcaatgaatcgaaccaactcgaaaatagttcg 6413340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 7702972 - 7702936
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  7702972 ggctggcaatgaaccgaaccaactcgattatagttcg 7702936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 24469820 - 24469856
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  24469820 ggctggcaatgaaccgaaccaactcgattatagttcg 24469856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 24576046 - 24576010
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  24576046 ggctgacaatgaaccgaaccaactcgaaaatagttcg 24576010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 28006483 - 28006451
Alignment:
Q  183 ggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    ||||||||||||||||||||||| |||||||||    
T  28006483 ggcaatgaaccgaaccaactcgaaaatagttcg 28006451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 32179995 - 32179959
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  32179995 ggctggcaatgaaccgaaccaactcgattatagttcg 32179959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 9505118 - 9505165
Alignment:
Q  173 aagtacggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9505118 aagtagggctggcaatgaaccgaaccaactcgacaatagttcggaact 9505165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 12710839 - 12710803
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    ||||||||||||||||||||||||||| |||||||||    
T  12710839 ggctggcaatgaaccgaaccaactcgaaaatagttcg 12710803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 19560772 - 19560816
Alignment:
Q  174 agtacggctggcaatgaaccgaaccaactcgacaatagttcggaa 218  Q
    |||| |||||||||||||||||||||||||||  |||||||||||    
T  19560772 agtagggctggcaatgaaccgaaccaactcgaatatagttcggaa 19560816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 54432180 - 54432216
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    ||||||||||||||||||||||||||| |||||||||    
T  54432180 ggctggcaatgaaccgaaccaactcgaaaatagttcg 54432216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 52934947 - 52934908
Alignment:
Q  181 ctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  52934947 ctggcaatgaactgaaccaacttgacaatagttcggaact 52934908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 26049543 - 26049577
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagtt 213  Q
    ||||||||||||||||||||||||||| |||||||    
T  26049543 ggctggcaatgaaccgaaccaactcgaaaatagtt 26049577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 28242717 - 28242679
Alignment:
Q  182 tggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  28242717 tggcaatgaaccgaatcaactcgacaataattcggaact 28242679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 25253839 - 25253798
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    |||||||||||||||||||||||||||  |||||| ||||||    
T  25253839 ggctggcaatgaaccgaaccaactcgaatatagtttggaact 25253798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 1674759 - 1674731
Alignment:
Q  186 aatgaaccgaaccaactcgacaatagttc 214  Q
    |||||||||||||||||||||||||||||    
T  1674759 aatgaaccgaaccaactcgacaatagttc 1674731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 23206311 - 23206347
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  23206311 ggctggcaatgaaccgaaccaactcgattatagttcg 23206347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 40943698 - 40943662
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||| |||||||||||||||| |||||||||    
T  40943698 ggctggcaataaaccgaaccaactcgaaaatagttcg 40943662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 3308071 - 3308030
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3308071 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 3308030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 39478192 - 39478151
Alignment:
Q  174 agtacggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  39478192 agtagggctggcaatgaaccgaaccaactcgaaaatagttcg 39478151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 32740769 - 32740735
Alignment:
Q  186 aatgaaccgaaccaactcgacaatagttcggaact 220  Q
    |||||||||||||||||||||||||||| ||||||    
T  32740769 aatgaaccgaaccaactcgacaatagtttggaact 32740735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 453620 - 453584
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  453620 ggctggcaatgaaccgaaccaactcgattatagttcg 453584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 11055229 - 11055270
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  11055229 ggctgacaatgaaccgaaccaactcgacaatagttcggaact 11055270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 43387400 - 43387360
Alignment:
Q  173 aagtacggctggcaatgaaccgaaccaactcgacaatagtt 213  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  43387400 aagtagggctggcaatgaaccgaaccaactcgacaatagtt 43387360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 38791828 - 38791789
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaa 218  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  38791828 ggctggcaatgaaccgaaccaactcgacaatagtttggaa 38791789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 22184640 - 22184606
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagtt 213  Q
    |||||||||||||||||||||||||||||||||||    
T  22184640 ggctggcaatgaaccgaaccaactcgacaatagtt 22184606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 9959468 - 9959427
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  9959468 ggctgacaatgaaccgaaccaactcgacaatagttcgaaact 9959427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 4274559 - 4274600
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    |||| |||||||||||||||||||||| ||||||||| ||||    
T  4274559 ggctagcaatgaaccgaaccaactcgaaaatagttcgaaact 4274600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 9222138 - 9222171
Alignment:
Q  182 tggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||| |||||||||    
T  9222138 tggcaatgaaccgaaccaactcgaaaatagttcg 9222171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 12673034 - 12673067
Alignment:
Q  182 tggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||| |||||||||    
T  12673034 tggcaatgaaccgaaccaactcgaaaatagttcg 12673067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 26633069 - 26633032
Alignment:
Q  183 ggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  26633069 ggcaatgaaccgaaccaactcgataatagttcgtaact 26633032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 27891523 - 27891482
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||| ||||||| |||| |||||||||||||||||||||||    
T  27891523 ggctgacaatgaatcgaatcaactcgacaatagttcggaact 27891482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 28265671 - 28265712
Alignment:
Q  174 agtacggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||| |||||||||||||| |||||||||||| |||||||||    
T  28265671 agtagggctggcaatgaactgaaccaactcgaaaatagttcg 28265712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 48802478 - 48802519
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||    
T  48802478 ggctgacaatgaaccgaaccaactcgaaaatagttcgaaact 48802519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 51995212 - 51995179
Alignment:
Q  182 tggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||| |||||||||    
T  51995212 tggcaatgaaccgaaccaactcgaaaatagttcg 51995179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 80634 - 80598
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  80634 ggctggcaatgaaccgatccaactcgaaaatagttcg 80598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 12789555 - 12789591
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  12789555 ggctggcaatgaaccgaaccaactcgattatagttcg 12789591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 45674972 - 45674936
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  45674972 ggctggcaatgaaccgaaccaactcgattatagttcg 45674936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 52813732 - 52813704
Alignment:
Q  185 caatgaaccgaaccaactcgacaatagtt 213  Q
    |||||||||||||||||||||||||||||    
T  52813732 caatgaaccgaaccaactcgacaatagtt 52813704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 53370009 - 53369973
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  53370009 ggctggcaatgaaccgaaccaactcgattatagttcg 53369973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 3409191 - 3409232
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  3409191 ggctggcaatgaaccgaaccaactcgacaatagttcgaaact 3409232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 44740486 - 44740520
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagtt 213  Q
    |||||||||||||||||||||||||||||||||||    
T  44740486 ggctggcaatgaaccgaaccaactcgacaatagtt 44740520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 40680344 - 40680307
Alignment:
Q  181 ctggcaatgaaccgaaccaactcgacaatagttcggaa 218  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  40680344 ctggcaatgaaccgaaccaactcaataatagttcggaa 40680307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 27464575 - 27464611
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  27464575 ggctgacaatgaaccgaaccaactcgaaaatagttcg 27464611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 27634808 - 27634772
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  27634808 ggctggcaatgaaccgaaccaactcgattatagttcg 27634772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 33831632 - 33831596
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  33831632 ggctggcaatgaaccgaaccaactcgattatagttcg 33831596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 222229 - 222263
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagtt 213  Q
    |||||||||||||||||||||||||||||||||||    
T  222229 ggctggcaatgaaccgaaccaactcgacaatagtt 222263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 24928964 - 24929002
Alignment:
Q  130 gatcaacaaaacaaataaaaatcaacactttgaacaacc 168  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  24928964 gatcaacaaaaaaaataaaaatcaacactttgaacaacc 24929002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 33124837 - 33124803
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagtt 213  Q
    |||||||||||||||||||||||||||||||||||    
T  33124837 ggctggcaatgaaccgaaccaactcgacaatagtt 33124803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 18249996 - 18250031
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttc 214  Q
    ||||||||||||||||||||||||||| ||||||||    
T  18249996 ggctggcaatgaaccgaaccaactcgaaaatagttc 18250031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 22075205 - 22075171
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagtt 213  Q
    ||||||||||||||||||||||||||| |||||||    
T  22075205 ggctggcaatgaaccgaaccaactcgataatagtt 22075171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 33935650 - 33935616
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagtt 213  Q
    ||||||||||||| |||||||||||||||||||||    
T  33935650 ggctggcaatgaatcgaaccaactcgacaatagtt 33935616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 44421904 - 44421938
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagtt 213  Q
    ||||| |||||||||||||||||||||||||||||    
T  44421904 ggctgtcaatgaaccgaaccaactcgacaatagtt 44421938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 665845 - 665886
Alignment:
Q  174 agtacggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||| |||||||||||||||||||||||||||  ||||||||    
T  665845 agtagggctggcaatgaaccgaaccaactcgattatagttcg 665886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 5794930 - 5794975
Alignment:
Q  170 tttaagtacggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||| ||||||||||||||||||||||| |||  ||||||||    
T  5794930 tttaagtagggctggcaatgaaccgaaccaacccgattatagttcg 5794975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 15434353 - 15434312
Alignment:
Q  173 aagtacggctggcaatgaaccgaaccaactcgacaatagttc 214  Q
    ||||| |||||||||||||||||||||||||||  |||||||    
T  15434353 aagtagggctggcaatgaaccgaaccaactcgattatagttc 15434312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 18740216 - 18740257
Alignment:
Q  174 agtacggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||| ||| ||||||||||||||||||||||| |||||||||    
T  18740216 agtagggccggcaatgaaccgaaccaactcgaaaatagttcg 18740257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 23227002 - 23227043
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    |||||| ||||| |||||||||||||||||||||||| ||||    
T  23227002 ggctggtaatgatccgaaccaactcgacaatagttcgaaact 23227043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 23236155 - 23236196
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    |||||| ||||| |||||||||||||||||||||||| ||||    
T  23236155 ggctggtaatgatccgaaccaactcgacaatagttcgaaact 23236196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 33171537 - 33171578
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    |||||||||||| |||||||||||||| ||||||||| ||||    
T  33171537 ggctggcaatgatccgaaccaactcgataatagttcgaaact 33171578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 41449882 - 41449841
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||| |||||| |||||||||||||||||||||||| ||||    
T  41449882 ggctgacaatgatccgaaccaactcgacaatagttcgaaact 41449841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 33898947 - 33898983
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  33898947 ggctgacaatgaaccgaaccaactcgaaaatagttcg 33898983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 36927141 - 36927105
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  36927141 ggctggcaatgaaccgaaccaactcgattatagttcg 36927105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 1840693 - 1840731
Alignment:
Q  182 tggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  1840693 tggcaatgaaccgaaccaactcgacaatagttcagaact 1840731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 39414312 - 39414278
Alignment:
Q  186 aatgaaccgaaccaactcgacaatagttcggaact 220  Q
    |||||||||||||||||||||||||||||| ||||    
T  39414312 aatgaaccgaaccaactcgacaatagttcgaaact 39414278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 19716315 - 19716282
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagt 212  Q
    ||||||||||||||||||||||||||| ||||||    
T  19716315 ggctggcaatgaaccgaaccaactcgaaaatagt 19716282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 27450584 - 27450617
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagt 212  Q
    ||||||||||||||||||||||||||| ||||||    
T  27450584 ggctggcaatgaaccgaaccaactcgaaaatagt 27450617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 32945024 - 32945065
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||    
T  32945024 ggctgacaatgaaccgaaccaactcgaaaatagttcgaaact 32945065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 3801367 - 3801403
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  3801367 ggctggcaatgaaccgaaccaactcgaatatagttcg 3801403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 15933300 - 15933264
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  15933300 ggctggcaatgaaccgaaccaactcgagtatagttcg 15933264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 27196214 - 27196178
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  27196214 ggctgacaatgaaccgaaccaactcgaaaatagttcg 27196178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 27906235 - 27906199
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  27906235 ggctggcaatgaaccgaaccaactcgattatagttcg 27906199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 38522864 - 38522900
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  38522864 ggctggcaatgaaccgaaccaactcgaatatagttcg 38522900  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 4441308 - 4441345
Alignment:
Q  183 ggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  4441308 ggcaatgaaccgaaccaactcgacaatagttcgaaact 4441345  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 13312161 - 13312125
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    ||||||||||||||||||||||||||| |||||||||    
T  13312161 ggctggcaatgaaccgaaccaactcgaaaatagttcg 13312125  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 1501985 - 1501944
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcggaact 220  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||    
T  1501985 ggctgacaatgaaccgaaccaactcgacaattgttcgaaact 1501944  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 3081716 - 3081757
Alignment:
Q  174 agtacggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||| ||||||||||||||||||||| ||||| |||||||||    
T  3081716 agtagggctggcaatgaaccgaaccagctcgaaaatagttcg 3081757  T

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Target: scaffold0135 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 32791 - 32824
Alignment:
Q  182 tggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||| |||||||||    
T  32791 tggcaatgaaccgaaccaactcgaaaatagttcg 32824  T

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Target: scaffold0316 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 19433 - 19397
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    |||||||||||||||||||||||||||  ||||||||    
T  19433 ggctggcaatgaaccgaaccaactcgattatagttcg 19397  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 21224 - 21188
Alignment:
Q  179 ggctggcaatgaaccgaaccaactcgacaatagttcg 215  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  21224 ggctgacaatgaaccgaaccaactcgaaaatagttcg 21188  T

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