View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6185_high_4 (Length: 343)
Name: NF6185_high_4
Description: NF6185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6185_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 23224544 - 23224862
Alignment:
| Q |
18 |
gaatgagtatgggtagtgttttctcgcttggtcatggcccgttcgacaaaattagaaaaggttaaggcgtctcgaaaatgcttgcaatcgaagctgagga |
117 |
Q |
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| T |
23224544 |
gaatgagtatgggtagtgttatctcgcttgatcatggcccgttcgacaaaattagaaaaggttaaagcgtctcgaaaatgcttgtaatcgaagcagagga |
23224643 |
T |
|
| Q |
118 |
tgggttgtgcgagaaagagtggtttccatctctctgagagaatgcttgtgacagctgcgtctttggttggaagaaagaagagaatgtgatgaagaagtga |
217 |
Q |
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| T |
23224644 |
tgagttgtgagagaaagagtggtttccatctctctgagagaatgcttgtgacggctgtgtctttggtgggaagacaggagagaatgtgatgaagaagtga |
23224743 |
T |
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| Q |
218 |
atctggaagattgctgattctgtctttttcttcttgaattg-aaaggcgcagcggccatgacattgcggtggctgatgggcaaatgaaaaaagccaagtt |
316 |
Q |
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| T |
23224744 |
atctggaaaattgctgattttgtcttcttcttcttgaattgaaaaggcgcagcggccatgacattgcggtggccgatgggaaaatgaaaaaagccaagtt |
23224843 |
T |
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| Q |
317 |
ttttctgtgttttcttatc |
335 |
Q |
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| T |
23224844 |
ttttctgtgttttcttatc |
23224862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 39558530 - 39558418
Alignment:
| Q |
132 |
aagagtggtttccatctctctgagagaatgcttgtgacagctgcgtctttggttggaagaaagaagagaatgtgatgaagaagtgaatctggaagattgc |
231 |
Q |
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| T |
39558530 |
aagagtggcttccacctctttgagaggatggttgtggccgcagcgtctttggtaggaagaaaagagaggatttgatgaagaagtgcgtccggaagatcac |
39558431 |
T |
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| Q |
232 |
tgattctgtcttt |
244 |
Q |
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||||||||||||| |
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| T |
39558430 |
tgattctgtcttt |
39558418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 49857905 - 49857981
Alignment:
| Q |
186 |
ggaagaaagaagagaatgtgatgaagaagtgaatctggaagattgctgattctgtctttttcttcttgaattgaaag |
262 |
Q |
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| T |
49857905 |
ggaagaaaggagagaatatgatgaacaagtgagtctggaagcgcactgattctgtcttcttcttctggaattgaaag |
49857981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 49971921 - 49972025
Alignment:
| Q |
154 |
agagaatgcttgtgacagctgcgtctttggttggaagaaagaagagaatgtgatgaagaagtgaatctggaagattgctgattctgtctttttcttcttg |
253 |
Q |
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|||| ||| ||||||| || || | |||||| |||||||| | ||||||||| ||||||||||||||| ||| ||||||||||||| ||||||||| |
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| T |
49971921 |
agaggatgattgtgacggcggcatttttggtaggaagaaaagaaagaatgtgaataagaagtgaatctgggagagcactgattctgtcttcttcttcttg |
49972020 |
T |
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| Q |
254 |
aattg |
258 |
Q |
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||||| |
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| T |
49972021 |
aattg |
49972025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 50814132 - 50814020
Alignment:
| Q |
132 |
aagagtggtttccatctctctgagagaatgcttgtgacagctgcgtctttggttggaagaaagaagagaatgtgatgaagaagtgaatctggaagattgc |
231 |
Q |
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|||||||| ||||| |||| |||||||||| ||||| | ||||||||||| || ||||| || | ||||| | ||||||||||| || || |||| | |
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| T |
50814132 |
aagagtggattccacctctttgagagaatggttgtggccgctgcgtctttcgtcggaaggaatgacagaatttcatgaagaagtgtgtccggcagatcac |
50814033 |
T |
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| Q |
232 |
tgattctgtcttt |
244 |
Q |
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| T |
50814032 |
tgattctgtcttt |
50814020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 50861732 - 50861844
Alignment:
| Q |
132 |
aagagtggtttccatctctctgagagaatgcttgtgacagctgcgtctttggttggaagaaagaagagaatgtgatgaagaagtgaatctggaagattgc |
231 |
Q |
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|||||||| ||||| |||| |||||||||| ||||| | ||||||||||| || ||||| || | ||||| | ||||||||||| || || |||| | |
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| T |
50861732 |
aagagtggattccacctctttgagagaatggttgtggccgctgcgtctttcgtcggaaggaatgacagaatttcatgaagaagtgtgtccggcagatcac |
50861831 |
T |
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| Q |
232 |
tgattctgtcttt |
244 |
Q |
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| T |
50861832 |
tgattctgtcttt |
50861844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 49974054 - 49974159
Alignment:
| Q |
62 |
gacaaaattagaaaaggttaaggcgtctcgaaaatgcttgcaatcgaagctgaggatgggttgtgcgagaaagagtggtttccatctctctgagagaatg |
161 |
Q |
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||||||||| ||||||||||| || ||| |||| | | | |||||||| ||||||| |||||| ||| ||||||||||||| ||| ||||||||| |
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| T |
49974054 |
gacaaaattggaaaaggttaaagcctcttgaaagggttggtcatcgaagcggaggatgagttgtgagagccagagtggtttccacttcttcgagagaatg |
49974153 |
T |
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| Q |
162 |
cttgtg |
167 |
Q |
| |
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|||||| |
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| T |
49974154 |
cttgtg |
49974159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 53341036 - 53341105
Alignment:
| Q |
137 |
tggtttccatctctctgagagaatgcttgtgacagctgcgtctttggttggaagaaagaagagaatgtga |
206 |
Q |
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||||||||| |||| |||||| ||||||||| | | | |||||||||||| |||||| ||||||||||| |
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| T |
53341036 |
tggtttccacctctttgagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtga |
53341105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 13450913 - 13450977
Alignment:
| Q |
141 |
ttccatctctctgagagaatgcttgtgacagctgcgtctttggttggaagaaagaagagaatgtg |
205 |
Q |
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|||||||||| | | ||||| |||||| | || |||| |||||||||||||||| |||||||||| |
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| T |
13450913 |
ttccatctctttcacagaatacttgtggcggcggcgtgtttggttggaagaaaggagagaatgtg |
13450977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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