View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6185_high_6 (Length: 310)

Name: NF6185_high_6
Description: NF6185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6185_high_6
NF6185_high_6
[»] chr5 (1 HSPs)
chr5 (4-300)||(43016156-43016445)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 43016445 - 43016156
Alignment:
Q  4 aaaagtcaataagttacaacataggattacttcaaagttcatacgtaatggcattcatatgttgtacacctcatagatatagcattacggtaatgctata 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43016445 aaaagtcaataagttacaacataggattacttcaaagttcatacgtaatggcattcatatgttgtacacctcatagatatagcattacggtaatgctata 43016346  T
Q  104 tacaaactattttcagtaacatctgataaataaataaatacaatacactatttgtacacctcataggtataaaattatgatcaagagtggaatctacaaa 203  Q
    |||||||||||||||||||   |||    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43016345 tacaaactattttcagtaa---ctg----ataaataaatacaatacactatttgtacacctcataggtatagaattatgatcaagagtggaatctacaaa 43016253  T
Q  204 ggaattcaataaaagccttcacgaaaactcatttgttaatttcattctatagcaatatagagccaaaataatgcttctggtcatttttcaatctgtg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43016252 ggaattcaataaaagccttcacgaaaactcatttgttaatttcattctatagcaatatagagccaaaataatgcttctggtcatttttcaatctgtg 43016156  T

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