View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6185_low_1 (Length: 532)
Name: NF6185_low_1
Description: NF6185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6185_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 52157819 - 52158334
Alignment:
| Q |
1 |
catctgaccaagacaaatttgggacagagggctgtgagatattagctgaaccagtttcagtttatcagattcttttaccaacaaaggtaaggtagacaat |
100 |
Q |
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| T |
52157819 |
catctgaccaagacaaatttgggacagagggctgtgagatattagctgaaccagtttcagtttatcagtttcttttaccaacaaaggtaaggtagacaat |
52157918 |
T |
|
| Q |
101 |
ttcttcacttcagataaagcaaaattgacacggctaaaaccttgcagcaagtgtgatttccaaagtcgctaaggataagttgtatatactgaacaattta |
200 |
Q |
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| T |
52157919 |
ttcttcacttcagataaagcaaaattgacacggccaaa-ccttgcagcaagtgtgatttccaaagtcgctaaggataagttgtatatactgaacaattta |
52158017 |
T |
|
| Q |
201 |
aataaaaaaggaaggcagcaaaggtggtatgagcattatttcaactagagttatacaaagatcatttttcttatatggtctttttgtttcctttcttggg |
300 |
Q |
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| T |
52158018 |
aataaaaaaggaaggcagcaaaggtggtatgagcattatttcaactagagttatacaaagatcatttttcttatatggtctttttgtttcctttcttggg |
52158117 |
T |
|
| Q |
301 |
aaaccagcacatggaagatggattatggaataggatgagcaggaaatcaatactagtaacatgcaaggaaaaaccaacttctctggttccttcgtgaaat |
400 |
Q |
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| T |
52158118 |
aaaccagcacatggaagatggattatggaataggatgagcaggaaatcaatactagtaacatgcaaggaaaaagcaacttctctggttccttcgtgaaat |
52158217 |
T |
|
| Q |
401 |
ggaatggaaatggcagcaaagtacaaaatcaagcatgtctcagagaggcaaggaagagagatgagtaggaaatcacctcaagaactcctccattcgaata |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52158218 |
ggaatggaaatggcagcaaagtacaaaatcaagcatgtctcagagaggcaaggaagagagatgagtaggaaatcacctcaagaactcctccattcgaata |
52158317 |
T |
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| Q |
501 |
ctttaaaactcgaagaa |
517 |
Q |
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| T |
52158318 |
ctttaaaactcgaagaa |
52158334 |
T |
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