View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6185_low_4 (Length: 389)
Name: NF6185_low_4
Description: NF6185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6185_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 34819663 - 34819308
Alignment:
| Q |
18 |
gttcccccatgactctgtatggtgtgaggaaggcttgggagtttgcaaggtggtggcttcccttctgcagaaggtacaaaataaagaacaggtgcccgaa |
117 |
Q |
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| T |
34819663 |
gttcccccatgactctgtatggtgtgaggaaggcttgggagtttgcaaggtggtggcttcccttctgcagaaggtacaaaataaagaacaggtgcccgaa |
34819564 |
T |
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| Q |
118 |
ggcctacttttctgctttggagagtgatgataatgattttgccaggagtagtttttacatggaagataagcaagagattaaggttgaatatgatatgatt |
217 |
Q |
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| T |
34819563 |
ggcctacttttctgctttggagagtgatgataatgattttgccaggagtagtttttacatggaagacaagcaaaagattaaggttgaatatgatatgatt |
34819464 |
T |
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| Q |
218 |
gtttttattgaattcctatagattgcagaacatacatatagaaacattgctttctgatgaaacttaaaaatttgcagagaaagtatgaggcttttaaaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34819463 |
gtttttattgaattcctatagattgcagaacatacatatagaaacattgctttctgatgaaacttaaaaatttgcagagaaagtatgaggcttttaaaga |
34819364 |
T |
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| Q |
318 |
agagatagagacattcagaaaagatgaggccttttcaagagatagtattaccgttg |
373 |
Q |
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| T |
34819363 |
agagatagagacattcagaaaagctgaggccttttcaagagatagtattaccgttg |
34819308 |
T |
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