View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6187_high_11 (Length: 250)
Name: NF6187_high_11
Description: NF6187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6187_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 38059079 - 38058846
Alignment:
| Q |
14 |
aggccatattccttctaatccaatttcaggaatgggaaatttgacaaaatcagattttactttgtaaatatcctttgcacctagagttctgttgagcaac |
113 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| |
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| T |
38059079 |
aggccatattccttctaatccaacttcaggaatgggaattttgacaaaatcagattttactttgtaaatatcctttgcagcaagtgttctgttgagcaac |
38058980 |
T |
|
| Q |
114 |
gtttcaagtgattcgtctttcggaaacccataaaggtaaagaaccgattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcaggaa |
213 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38058979 |
gtttcaagtggttcgtctttcggaaacccgtaaaggtaaagaactgattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcaggaa |
38058880 |
T |
|
| Q |
214 |
acttctcttgcatcaagtgaatgagcttatctac |
247 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
38058879 |
acttctcttgcatcaagtgtatgagcttatctac |
38058846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 38061377 - 38061610
Alignment:
| Q |
16 |
gccatattccttctaatccaatttcaggaatgggaaatttgacaaaatcagattttactttgtaaatatcctttgcacctagagttctgttgagcaacgt |
115 |
Q |
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|||| |||| ||||||||||||||||| |||||||| | | ||||||||||| ||||||||| |||||||||||||| || | ||||||||||||||| | |
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| T |
38061377 |
gccacattctttctaatccaatttcagaaatgggaattctcacaaaatcagactttactttgaaaatatcctttgcagcttgtgttctgttgagcaacat |
38061476 |
T |
|
| Q |
116 |
ttcaagtgattcgtctttcggaaacccataaaggtaaagaaccgattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcaggaaac |
215 |
Q |
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| T |
38061477 |
ttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatctcaatacaatcttctctaaccaaaccaagttctggaaac |
38061576 |
T |
|
| Q |
216 |
ttctcttgcatcaagtgaatgagcttatctacac |
249 |
Q |
| |
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|| |||| ||||||| ||||||| |||||||||| |
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| T |
38061577 |
ttttctttcatcaagggaatgagtttatctacac |
38061610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 38073416 - 38073178
Alignment:
| Q |
11 |
caaaggccatattccttctaatccaatttcaggaatgggaaatttgacaaaatcagattttactttgtaaatatcctttgcacctagagttctgttgagc |
110 |
Q |
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||||||||||| ||||||||| ||| |||||||||| |||| |||||||||||||||||| ||||| || ||||||||||| |||| |||||||||||| |
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| T |
38073416 |
caaaggccataatccttctaaaccagtttcaggaataggaattttgacaaaatcagatttcgctttggaattatcctttgcagctagtgttctgttgagc |
38073317 |
T |
|
| Q |
111 |
aacgtttcaagtgattcgtctttcggaaacccataaaggtaaagaaccgattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcag |
210 |
Q |
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||||||||||||| |||| ||| ||||||| | ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
38073316 |
aacgtttcaagtggttcgccttctggaaaccgaaaaaggtaaagaactgattcaatccaactcatttcaacacaatcttctctaaccaaaccaagttcag |
38073217 |
T |
|
| Q |
211 |
gaaacttctcttgcatcaagtgaatgagcttatctacac |
249 |
Q |
| |
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||||||| |||| ||||||| | | ||| |||||||||| |
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| T |
38073216 |
gaaacttttcttccatcaagggtaagaggttatctacac |
38073178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 38086925 - 38086687
Alignment:
| Q |
12 |
aaaggccatattccttctaatccaatttcaggaatgggaaatttgacaaaatcagattttactttgtaaatatcctttgcacctagagttctgttgagca |
111 |
Q |
| |
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||||||||||| |||||||||||| |||||||||| |||| | | ||||||||||||||| ||||| | ||||| || | || | |||||||| |||| |
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| T |
38086925 |
aaaggccatatgccttctaatccagtttcaggaattggaattctcacaaaatcagattttgctttgaatatatcaagtgtagcttgtgttctgttaagca |
38086826 |
T |
|
| Q |
112 |
acgtttcaagtgattcgtctttcggaaacccataaaggtaaagaaccgattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcagg |
211 |
Q |
| |
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|| |||| ||| |||| |||||| | ||| ||||||||| ||||||| ||||||||| |||| ||||| |||||||||||||||||||||||| |
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| T |
38086825 |
acacttcaggtgtagaaccttttggaaactgaaaaaagtaaagaacagattcaatccaactcatttcaatacaatattctctaaccaaaccaagctcagg |
38086726 |
T |
|
| Q |
212 |
aaacttctcttgcatcaagtgaatgagcttatctacacc |
250 |
Q |
| |
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|||||||||||| | |||| | ||||| ||||||||||| |
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| T |
38086725 |
aaacttctcttgaaccaagggtatgagtttatctacacc |
38086687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 38082498 - 38082250
Alignment:
| Q |
11 |
caaaggccatattccttctaatccaatttcaggaatgggaaatttgacaaaatcagattttactttgtaaata--tcct-------ttgcacctagagtt |
101 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||||| || | ||||| |||| ||| |
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| T |
38082498 |
caaagaccatattccttctaatccattttcaggaatgggagttttcacaaaatcagattttgctttgtaaataaatcttgggctgtttgcagctagtgtt |
38082399 |
T |
|
| Q |
102 |
ctgttgagcaacgtttcaagtgattcgtctttcggaaacccataaaggtaaagaaccgattcaacccaactcatctcaacacaatcttctctaaccaaac |
201 |
Q |
| |
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||||| |||||| |||| || || | |||||||||| | ||||||||||||||||||||| ||||||||| |||| ||||| |||||| |||| || |
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| T |
38082398 |
ctgttaagcaacacttcaggtaatgcacctttcggaaattgaaaaaggtaaagaaccgattcaatccaactcatttcaatacaattttctctgaccacac |
38082299 |
T |
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| Q |
202 |
caagctcaggaaacttctcttgcatcaagtgaatgagcttatctacacc |
250 |
Q |
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| | |||||||||||| | | ||||||| ||||||| ||||||||||| |
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| T |
38082298 |
ccaactcaggaaacttttgatccatcaagggaatgagtttatctacacc |
38082250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 37954593 - 37954522
Alignment:
| Q |
159 |
gattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcaggaaacttctcttgcatcaag |
230 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
37954593 |
gattcaatccaactcatctcagtacaatcttctctaaccaaaccaagctctggaaactcctcttccatcaag |
37954522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 38078103 - 38078040
Alignment:
| Q |
187 |
cttctctaaccaaaccaagctcaggaaacttctcttgcatcaagtgaatgagcttatctacacc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||| |
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|
| T |
38078103 |
cttctctaaccaaaccaagctcaggaaacttctcttgcatcaagggcatgagttcatctacacc |
38078040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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