View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6187_high_13 (Length: 245)
Name: NF6187_high_13
Description: NF6187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6187_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 39494273 - 39494515
Alignment:
| Q |
1 |
tttaaaaatttagatagatcaggtaattaaaaagatcaacaataataaaagaaatggttgcaatgaaaaagaacatttacccaattctggttctattaaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39494273 |
tttaaaaagttagatagatcaggtaattaaaaagatcaacaataataaaagaaacggttgcaatgaaaaagaacatttacccaattctggttctattaaa |
39494372 |
T |
|
| Q |
101 |
gcatcatattttttctctcttaactcaggccgcatcagttttccatcaaatttacatggcattgactcaaaacccttcatgcgtccgtcaaactgcttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39494373 |
gcatcatattttttctctcttaactcaggccgcttcagttttccatcaaatttacatggcattgactcaaaacccttcatgcgtccgtcaaactgcttct |
39494472 |
T |
|
| Q |
201 |
cttttggcttgagctccttcacgtgtgctttgaacttcttgtc |
243 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39494473 |
cttttggcttcagctccttcacgtgtgctttgaacttcttgtc |
39494515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 88 - 243
Target Start/End: Original strand, 39426481 - 39426636
Alignment:
| Q |
88 |
tggttctattaaagcatcatattttttctctcttaactcaggccgcatcagttttccatcaaatttacatggcattgactcaaaacccttcatgcgtccg |
187 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||| || |||| ||||||||| ||||| ||||||||| |
|
|
| T |
39426481 |
tggttctattaaagcatcatattgtttctctcttaactcaggccgctccagctgtccatcaaattcacttggctttgactcaagaccctccatgcgtccc |
39426580 |
T |
|
| Q |
188 |
tcaaactgcttctcttttggcttgagctccttcacgtgtgctttgaacttcttgtc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
39426581 |
tcaaactgcttctcttttggcttgagctccttctcgtgtactttgaagttcttgtc |
39426636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 88 - 243
Target Start/End: Complemental strand, 39130780 - 39130625
Alignment:
| Q |
88 |
tggttctattaaagcatcatattttttctctcttaactcaggccgcatcagttttccatcaaatttacatggcattgactcaaaacccttcatgcgtccg |
187 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| ||||||||| || ||||||||| |||||||| |||| ||||||||| || |||||||| ||| |
|
|
| T |
39130780 |
tggttctattaaagaatcatattgtttctctcttaagtcaggccgcttcggttttccatgaaatttacttggctttgactcaagactcttcatgcatccc |
39130681 |
T |
|
| Q |
188 |
tcaaactgcttctcttttggcttgagctccttcacgtgtgctttgaacttcttgtc |
243 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| ||| ||||||| |||||||| |
|
|
| T |
39130680 |
tcaaactgcttctcttttggcttaagatccttcaaatgtactttgaatttcttgtc |
39130625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 39124764 - 39124729
Alignment:
| Q |
88 |
tggttctattaaagcatcatattttttctctcttaa |
123 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39124764 |
tggttctattaaagcatcatattgtttctctcttaa |
39124729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 39130904 - 39130837
Alignment:
| Q |
1 |
tttaaaaatttagatagatcaggtaattaaaaagatcaacaataataaaagaaatggttgcaatgaaa |
68 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||| ||||||| | | ||||||||||||| ||||||| |
|
|
| T |
39130904 |
tttaaaaaattaggtagatctggtaattaaaaatgtcaacaacattgaaagaaatggttgaaatgaaa |
39130837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University