View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6187_high_16 (Length: 232)

Name: NF6187_high_16
Description: NF6187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6187_high_16
NF6187_high_16
[»] chr4 (15 HSPs)
chr4 (12-231)||(38058445-38058664)
chr4 (8-228)||(38061793-38062013)
chr4 (8-218)||(38072769-38072979)
chr4 (8-228)||(38086279-38086499)
chr4 (11-214)||(38081857-38082060)
chr4 (12-226)||(37954107-37954321)
chr4 (61-205)||(36080120-36080264)
chr4 (107-198)||(38090774-38090865)
chr4 (16-192)||(36107939-36108115)
chr4 (87-174)||(38125588-38125675)
chr4 (61-174)||(38129515-38129628)
chr4 (87-228)||(38145711-38145852)
chr4 (120-192)||(34971530-34971602)
chr4 (120-206)||(36100784-36100870)
chr4 (16-177)||(21482671-21482832)
[»] chr6 (3 HSPs)
chr6 (136-228)||(7001449-7001541)
chr6 (16-192)||(6838700-6838876)
chr6 (135-174)||(10792884-10792923)
[»] chr2 (5 HSPs)
chr2 (14-177)||(11933728-11933891)
chr2 (14-177)||(11946949-11947112)
chr2 (50-174)||(11811316-11811440)
chr2 (17-192)||(8338565-8338740)
chr2 (137-214)||(11786982-11787059)
[»] chr5 (1 HSPs)
chr5 (69-173)||(36065268-36065372)
[»] chr1 (1 HSPs)
chr1 (135-174)||(34268712-34268751)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 38058445 - 38058664
Alignment:
Q  12 tcagtggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttcttga 111  Q
    ||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38058445 tcagtggcggtggctatggaaccttggttcgtaaattcgggcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttcttga 38058544  T
Q  112 cagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttccagtt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||    
T  38058545 cagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagattaaacttgttcaagtt 38058644  T
Q  212 ccatcaattgtgacagtctt 231  Q
    ||||||||||||||||||||    
T  38058645 ccatcaattgtgacagtctt 38058664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 38062013 - 38061793
Alignment:
Q  8 cacttcagtggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38062013 cacttcagtggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatattattgatgctcacataattgatgtgaagggtaggtttc 38061914  T
Q  108 ttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttcc 207  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||||||||     
T  38061913 ttgacagagaagcaatgggtgaggattttttttgggctattagaggaggtggaggagcaagttttggagtcataatttcatggaaggttaaacttgttca 38061814  T
Q  208 agttccatcaattgtgacagt 228  Q
    ||||||||||| |||| ||||    
T  38061813 agttccatcaagtgtgtcagt 38061793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 38072769 - 38072979
Alignment:
Q  8 cacttcagtggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttc 107  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||||||| || |||||  | |||||||||||||||||||||||||||||||||||||    
T  38072769 cacttcagtggtggtggctatggaaccttgttgcgtaaatacggtcttgcggccgataacgtcattgatgctcacataattgatgtgaagggtaggtttc 38072868  T
Q  108 ttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttcc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38072869 ttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttca 38072968  T
Q  208 agttccatcaa 218  Q
    |||||||||||    
T  38072969 agttccatcaa 38072979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 38086279 - 38086499
Alignment:
Q  8 cacttcagtggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttc 107  Q
    ||||||||||||||||| ||||||| |||| ||||||||| |||||||||||| ||||| || ||||||||  |||||||||||||||||||||||||||    
T  38086279 cacttcagtggtggtggatatggaaccttgttgcgtaaatacggtcttgcagccgataacatcattgatgcctacataattgatgtgaagggtaggtttc 38086378  T
Q  108 ttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttcc 207  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  38086379 ttgacagagaagcaatgggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttga 38086478  T
Q  208 agttccatcaattgtgacagt 228  Q
    |||||||||||||||||||||    
T  38086479 agttccatcaattgtgacagt 38086499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 38081857 - 38082060
Alignment:
Q  11 ttcagtggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttcttg 110  Q
    ||||||||||| |||||||||| |||| |||||||||  ||| | || || |||||| |||| ||||||||||||||||||||||| |||||||| ||||    
T  38081857 ttcagtggtggcggctatggaaccttgttgcgtaaatatggtttagccgcggataatgtaatcgatgctcacataattgatgtgaaaggtaggttacttg 38081956  T
Q  111 acagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttccagt 210  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||  |||    
T  38081957 acagagaagcaatgggtgaagattatttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagt 38082056  T
Q  211 tcca 214  Q
    ||||    
T  38082057 tcca 38082060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 37954107 - 37954321
Alignment:
Q  12 tcagtggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttcttga 111  Q
    |||||||||| |||||||||  |||| |||||||||  |||||| |||||||||||||| |||| |||||||||||||||||||| |||||| |||||||    
T  37954107 tcagtggtggcggctatggattcttgatgcgtaaatatggtctttcagctgataatatacttgacgctcacataattgatgtgaatggtagggttcttga 37954206  T
Q  112 cagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttccagtt 211  Q
    ||||||| | |||||||| ||| ||||||||||||||||||| |||||||||||||| ||||| || ||  |  |||||||| | ||||| ||||  |||    
T  37954207 cagagaatcgatgggtgaggatctgttttgggctattagaggaggtggaggagcaagctttggagttatcatagcatggaaggtaaaactagttcatgtt 37954306  T
Q  212 ccatcaattgtgaca 226  Q
    ||||||| |||||||    
T  37954307 ccatcaactgtgaca 37954321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 61 - 205
Target Start/End: Original strand, 36080120 - 36080264
Alignment:
Q  61 tgataatataattgatgctcacataattgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtgga 160  Q
    ||||||||||||||| ||  | ||  ||||||| || |||||  ||||||| ||| || ||||||| |||||||| ||||||||||| || ||||||||     
T  36080120 tgataatataattgacgcaaaaattgttgatgttaatggtagtattcttgatagaaaatcaatgggagaagatttattttgggctataaggggtggtggt 36080219  T
Q  161 ggagcaagttttggtgtcatagtttcatggaagattaaacttgtt 205  Q
    || |||||||||||||||||  ||  |||||||||||||||||||    
T  36080220 ggtgcaagttttggtgtcattcttaaatggaagattaaacttgtt 36080264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 38090774 - 38090865
Alignment:
Q  107 cttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaa 198  Q
    ||||| || ||| ||||||| |||||| | ||||||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||||||    
T  38090774 cttgatagggaatcaatgggggaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaagattaa 38090865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 36107939 - 36108115
Alignment:
Q  16 tggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttcttgacaga 115  Q
    ||||||||| ||||| || ||| || | ||||| |||||| | | ||||||||| ||||||||  | ||  ||||||| |||||||   ||||||| |||    
T  36107939 tggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgataatattattgatgcaaaaatggttgatgttaagggtaatattcttgataga 36108038  T
Q  116 gaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaa 192  Q
     || ||||||| |||||| | ||||||||||| ||||||||||| || || ||||||||||| ||  ||||||||||    
T  36108039 aaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttcatggaa 36108115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 38125588 - 38125675
Alignment:
Q  87 ttgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttgg 174  Q
    ||||||| || |||||| ||||||| ||  || |||||||||||||  | ||||||||||||||||| ||||||||||||||||||||    
T  38125588 ttgatgttaatggtaggattcttgataggaaatcaatgggtgaagaacttttttgggctattagaggaggtggaggagcaagttttgg 38125675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 38129515 - 38129628
Alignment:
Q  61 tgataatataattgatgctcacataattgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtgga 160  Q
    |||||||||  |||||||| | || |||||||| || |||||  |||||||||   || | ||||| |||||| | ||||||||||||||||| ||||||    
T  38129515 tgataatattgttgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactatgggggaagatcttttttgggctattagaggaggtgga 38129614  T
Q  161 ggagcaagttttgg 174  Q
    ||||||||||||||    
T  38129615 ggagcaagttttgg 38129628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 228
Target Start/End: Original strand, 38145711 - 38145852
Alignment:
Q  87 ttgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttc 186  Q
    |||||| ||||||||   ||||||||||| |||| ||||| || ||| | ||||||||||| |||||||||||||| | ||| |||||| |  |  |||     
T  38145711 ttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaagctttggtatacttctttg 38145810  T
Q  187 atggaagattaaacttgttccagttccatcaattgtgacagt 228  Q
     |||||||| || |||||||| |||||| |||  ||||||||    
T  38145811 gtggaagataaagcttgttcctgttccaccaacagtgacagt 38145852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 34971602 - 34971530
Alignment:
Q  120 caatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaa 192  Q
    ||||||| |||||| | ||||||||||| ||||||||||| || || ||||||||||| ||  ||||||||||    
T  34971602 caatgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaa 34971530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 36100784 - 36100870
Alignment:
Q  120 caatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttc 206  Q
    ||||||| |||||| | ||||||||||| || |||||||| || || ||||||||||| ||  ||||||||||  ||||||| ||||    
T  36100784 caatgggagaagatctattttgggctataaggggtggtggtggtgctagttttggtgttattctttcatggaaacttaaactggttc 36100870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 21482671 - 21482832
Alignment:
Q  16 tggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttcttgacaga 115  Q
    ||||||||| ||||||||  || || | ||||| |||||| | | ||||||||| ||||| ||  | ||  |||||||||| ||||   | ||||| |||    
T  21482671 tggtggtggatatggaaatatgatgagaaaatttggtctttctgttgataatattattgacgcaaaaattgttgatgtgaatggtaatatccttgataga 21482770  T
Q  116 gaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgt 177  Q
     || ||||||| |||||| | ||||||||||| ||||||||||| || || |||| ||||||    
T  21482771 aaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttatggtgt 21482832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 7001541 - 7001449
Alignment:
Q  136 gttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttccagttccatcaattgtgacagt 228  Q
    |||||| ||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| ||  |||||||| || | |||||||    
T  7001541 gttttgagctattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtatgacagt 7001449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 6838700 - 6838876
Alignment:
Q  16 tggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttcttgacaga 115  Q
    ||||||||| |||||||| ||| || | ||||| |||||| |   ||||||||| ||||| ||  | ||  ||||||| |||||||   ||||||| |||    
T  6838700 tggtggtgggtatggaaatttgatgagaaaatttggtctttctattgataatattattgacgcaaaaattgttgatgttaagggtaatattcttgataga 6838799  T
Q  116 gaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaa 192  Q
     || ||||||| |||||| | |||||||| || ||||||||||| || || ||||||||||| ||  ||||||||||    
T  6838800 aaatcaatgggagaagatcttttttgggccataagaggtggtggtggtgctagttttggtgttattctttcatggaa 6838876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 174
Target Start/End: Original strand, 10792884 - 10792923
Alignment:
Q  135 tgttttgggctattagaggtggtggaggagcaagttttgg 174  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  10792884 tgttttgagctattagaggaggtggaggagcaagttttgg 10792923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 11933728 - 11933891
Alignment:
Q  14 agtggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttcttgaca 113  Q
    ||||||||||| ||||| ||| || || | ||||  |||||| ||| ||||||||| || ||||| || ||||| ||||| || ||||| || ||||| |    
T  11933728 agtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgata 11933827  T
Q  114 gagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgt 177  Q
    || || ||||||| |||||| | ||||||||||||| ||||||||| ||||| || ||||||||    
T  11933828 gaaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgt 11933891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 11946949 - 11947112
Alignment:
Q  14 agtggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttcttgaca 113  Q
    ||||||||||| ||||| ||| || || | ||||  |||||| ||| ||||||||| || ||||| || ||||| ||||| || ||||| || ||||| |    
T  11946949 agtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgata 11947048  T
Q  114 gagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgt 177  Q
    || || ||||||| |||||| | ||||||||||||| ||||||||| ||||| || ||||||||    
T  11947049 gaaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgt 11947112  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 11811440 - 11811316
Alignment:
Q  50 ggtcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctatta 149  Q
    ||||||||| |||||||||||||||||||||| ||||| ||||| || || |   ||||  | ||||||   |||||||||||||| ||||||||||| |    
T  11811440 ggtcttgcaactgataatataattgatgctcaaataatcgatgttaacggaaacattctaaatagagaaatgatgggtgaagatttattttgggctataa 11811341  T
Q  150 gaggtggtggaggagcaagttttgg 174  Q
    |||| ||||||||| |||| |||||    
T  11811340 gaggaggtggaggatcaagctttgg 11811316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 8338565 - 8338740
Alignment:
Q  17 ggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatataattgatgctcacataattgatgtgaagggtaggtttcttgacagag 116  Q
    |||||||| |||||||| ||| || | || || |||||| | | ||||||||| ||||| ||  | || |||||||| || ||||    |||||| |||     
T  8338565 ggtggtgggtatggaaatttgatgagaaagtttggtctttctgttgataatatcattgacgcaaaaattattgatgtcaatggtaatactcttgatagaa 8338664  T
Q  117 aagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaa 192  Q
    || ||||||| |||||| |||||||||||||||| |||||||| || || ||||||||||| ||  ||||||||||    
T  8338665 aatcaatgggagaagatctgttttgggctattaggggtggtggtggtgctagttttggtgttattctttcatggaa 8338740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 11787059 - 11786982
Alignment:
Q  137 ttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttccagttcca 214  Q
    |||||||||||||||||||||||||| | |||||||||| |  |  |||  |||||||| ||||||||||| ||||||    
T  11787059 ttttgggctattagaggtggtggaggtggaagttttggtattcttctttggtggaagataaaacttgttcctgttcca 11786982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 36065268 - 36065372
Alignment:
Q  69 taattgatgctcacataattgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaag 168  Q
    |||||| ||||||| ||||||||||||| |  ||| ||||||| |||||| |||||| ||| ||| |||||||||| ||||||||  |||||||||||||    
T  36065268 taattgttgctcacttaattgatgtgaatgaaaggcttcttgatagagaatcaatggttgaggatatgttttgggcgattagaggatgtggaggagcaag 36065367  T
Q  169 ttttg 173  Q
     ||||    
T  36065368 ctttg 36065372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 34268751 - 34268712
Alignment:
Q  135 tgttttgggctattagaggtggtggaggagcaagttttgg 174  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  34268751 tgttttgagctattagaggaggtggaggagcaagttttgg 34268712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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