View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6187_high_2 (Length: 402)
Name: NF6187_high_2
Description: NF6187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6187_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 33236108 - 33236481
Alignment:
| Q |
18 |
atgaagcctataaggggcattttctgaaaatcatatcagagtggcatgtttcacacctgaacaaggccccattagaagctaccaagtatattttttcttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33236108 |
atgaagcctataaggggcattttctgaaaatcatatcagagtggcatgtttcacacctgaacaaggccccattagaagctaccaagtatattttttcttt |
33236207 |
T |
|
| Q |
118 |
atattcaagtaaaacacaaatcttatatactaaagtagttatgccaagtgtaaactcttatgactttagaggctataaatatgtggtgggagcaccaata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33236208 |
atattcaagtaaaacacaaatcttatatactaaagtagttatgccaagtgtaaactcttatgactttagaggctataaatatgtggtgggagcaccaata |
33236307 |
T |
|
| Q |
218 |
ctacaacacaaagtatccttattcactataagttaaaaatatatatttgataatagcctaaagttgaatttatcaatatgtcattgtccaatggaactaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33236308 |
ctacaacacaaagtatccttattcactataagttaaaaatatatatttgataatagcctaaagttgaatttatcaatatgtcattgtccaatggaactaa |
33236407 |
T |
|
| Q |
318 |
actgccaaacccatttgatcttgatgagtctcaaatcctggataaagtttatctgacccacctccatgatgatg |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33236408 |
actgccaaacccatttgatcttgatgagtctcaaatcctggataaagtttatctgacccacctccatgatgatg |
33236481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University