View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6187_high_8 (Length: 282)
Name: NF6187_high_8
Description: NF6187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6187_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 54056851 - 54056601
Alignment:
| Q |
30 |
aagtgatgtgatagatgtcatagtttaataatgcgattgaaagnnnnnnncatgagtaaaagtgagatgttaaaaggatgtattatattaagtttagaga |
129 |
Q |
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| T |
54056851 |
aagtgatatgatagatgtcatagtttaataattcgattgaaagaaaaaa-catgagtaaaagtgagatgttaaaaggatgtattatattaagtttagaga |
54056753 |
T |
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| Q |
130 |
tgtctatttatcgatgtcctagattaaattgatggttttgtacatgggtgtcaatataactaacgattacagtacac-----------aaaagaaaagaa |
218 |
Q |
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| T |
54056752 |
tgtctatttatcgatgtcctagattaaattgatggttttgtacatgggtgtcaatataactaacaattacagtacacaaaacaaagacaaaagaaaagag |
54056653 |
T |
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| Q |
219 |
tagaaaacgtaatgaaactgaccaatagaataactttgtccttgtcacaggt |
270 |
Q |
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| T |
54056652 |
tagaaaacgtaatgaaactgaccaatagaataactttgtccttgtcacaggt |
54056601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 54457053 - 54456992
Alignment:
| Q |
205 |
acaaaagaaaagaatagaaaacgtaatgaaactgaccaatagaataactttgtccttgtcac |
266 |
Q |
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|||| |||| ||||||||||| || | ||||||||||||||||||||||||||||||||||| |
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| T |
54457053 |
acaagagaagagaatagaaaaagttacgaaactgaccaatagaataactttgtccttgtcac |
54456992 |
T |
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