View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6187_high_9 (Length: 267)
Name: NF6187_high_9
Description: NF6187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6187_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 4303442 - 4303677
Alignment:
| Q |
15 |
tgaaccaactgcatctagttagcgaacttcatttgagggtattaatgtaattttgcggtgtgagagcaatttttgaagtttaaagtgcaatttccctatg |
114 |
Q |
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| T |
4303442 |
tgaaccaactgcatctagttagcgaacttcatttgagggtattaatgtaatttagcggtgtgagagcaatttttgaagtttaaagtgcaatttccctatg |
4303541 |
T |
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| Q |
115 |
aaggttgctcacttttggaaaagagaggtgtggatttaaagcttttgttccaaggcttccaacatttgatgctctagtgttgtacttgtttttcttcatt |
214 |
Q |
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| T |
4303542 |
aaggttgctcacttttggaaaagagaggtgtggatttaaagcttttgttccaaggcttccaacatttgatgctctagtgttgtacttgtttttcttcatt |
4303641 |
T |
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| Q |
215 |
tgaattttatcttgtactttaatgggtattgattcc |
250 |
Q |
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| T |
4303642 |
tggattttatcttgtactttgatgggtattgattcc |
4303677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 32107574 - 32107522
Alignment:
| Q |
52 |
ggtattaatgtaattttgcggtgtgagagcaatttttgaagtttaaagtgcaa |
104 |
Q |
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| T |
32107574 |
ggtattaaggtaattttagggtgtgaaagcaatttttgaagtttaaagagcaa |
32107522 |
T |
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