View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6187_low_12 (Length: 256)
Name: NF6187_low_12
Description: NF6187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6187_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 39494048 - 39493808
Alignment:
| Q |
1 |
aagtatattgcaaatattgttaagcttatgagtttcagtactggttcaaatttcaatatccttacagactatgaggaagaggttttgcactttttatttt |
100 |
Q |
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| T |
39494048 |
aagtatattgcaaatattgttaagcttatgagtttcagtactggttcaaatttcaatatccttacagaatatgaggaagaggttttgcactttttatttt |
39493949 |
T |
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| Q |
101 |
atatgatattttatgaagtttatatagtcaacttgatttaccgattcttcaataaaatattgagaaagcctaaaatatgcgcagctaatcatgcagttac |
200 |
Q |
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| T |
39493948 |
atatgatattttatgaagtttatatagtcaacttgatttaccgattcttcaataaaatattgagaaag-ctaaaatatgcgcagctaatcatgcagttac |
39493850 |
T |
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| Q |
201 |
atcatgcacaggtaatcaattaagtcccgtcattgatgaaag |
242 |
Q |
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| T |
39493849 |
atcatacacaggtaatcaattaagtcccgtcattgatgaaag |
39493808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 39144245 - 39144409
Alignment:
| Q |
78 |
agaggttttgcacttttt-attttatatgatattttatgaagtttatatagtcaacttgatttaccgattcttcaataaaatattgagaaagcctaaaat |
176 |
Q |
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| T |
39144245 |
agaggtttttcactctttcattttatataatattttatgaagtttatattgtcaccttggtttaccgattcttcaaaaaaatattgagaaag-ctaaaat |
39144343 |
T |
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| Q |
177 |
atgcgcagctaatcatgcagttacatcatgcacaggtaatcaattaagtcccgtcattgatgaaag |
242 |
Q |
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| T |
39144344 |
atgtgcaactaattatgcagttacatcatacataggtaatcaattaagtcccgacattgatgaaag |
39144409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 39426144 - 39425902
Alignment:
| Q |
1 |
aagtatattgcaaatattgttaagcttatgagtttcagtactggttcaaatttcaatatccttacagactatgaggaagaggttttgcacttttt-attt |
99 |
Q |
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|||| ||||||||||| ||||||||||||||| |||||| ||||||||||| | ||| |||||| |||||| || ||||||||| |||| ||| || | |
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| T |
39426144 |
aagtttattgcaaatagcattaagcttatgagttacagtacaggttcaaattttactatacttacaaactatgtgggagaggtttttcactatttcatgt |
39426045 |
T |
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| Q |
100 |
tatatgatattttatgaagtttatatagtcaacttgatttaccgattcttcaataaaatattgagaaagcctaaaatatgcgc-agctaatcatgcagtt |
198 |
Q |
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| T |
39426044 |
tatataacattatataaagtatatattgtcaccttgatttaccaatccttcaaataaatactgaggaagcttaaa-tatgtgctagctaattatgcagtt |
39425946 |
T |
|
| Q |
199 |
acatcatgcacaggtaatcaattaagtcccgtcattgatgaaag |
242 |
Q |
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| T |
39425945 |
acatcgtacacatgtaatcaattaagtcccgccattgatgaaag |
39425902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 242
Target Start/End: Complemental strand, 39189252 - 39189123
Alignment:
| Q |
112 |
tatgaagtttatatagtcaacttgatttaccgattcttcaataaaatattgagaaagcctaaaatatgcgc-agctaatcatgcagttacatcatgcaca |
210 |
Q |
| |
|
|||||||||||||| |||| |||||||||| || |||||||||| || |||| |||| |||| ||| || ||||||| ||||||||||||| | |||| |
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| T |
39189252 |
tatgaagtttatattgtcaccttgatttactgaaccttcaataaa-tactgaggaagcttaaa-tatctgctagctaattatgcagttacatcgtacaca |
39189155 |
T |
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| Q |
211 |
ggtaatcaattaagtcccgtcattgatgaaag |
242 |
Q |
| |
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|||||||||||||||||| | |||||||||| |
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| T |
39189154 |
ggtaatcaattaagtcccaccgttgatgaaag |
39189123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 39131097 - 39131154
Alignment:
| Q |
185 |
ctaatcatgcagttacatcatgcacaggtaatcaattaagtcccgtcattgatgaaag |
242 |
Q |
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||||| |||||||||| || | |||||||||||||||||||||| |||||||||||| |
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| T |
39131097 |
ctaattatgcagttacgtcgtacacaggtaatcaattaagtcccaccattgatgaaag |
39131154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 39189466 - 39189395
Alignment:
| Q |
1 |
aagtatattgcaaatattgttaagcttatgagtttcagtactggttcaaatttcaatatccttacagactat |
72 |
Q |
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|||||||||||||||| ||||||| ||||||||| | ||| || |||||||| |||||| || ||| ||||| |
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| T |
39189466 |
aagtatattgcaaatagtgttaagtttatgagttactgtattgattcaaattacaatatgctgacaaactat |
39189395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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