View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6187_low_18 (Length: 239)
Name: NF6187_low_18
Description: NF6187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6187_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36519375 - 36519154
Alignment:
| Q |
1 |
caacaaggcaaaacaagatactccagattttgttctatgtttccttcacaagatgctaaagatgtgttatttatatcattcacaacaaaaatgtgttatt |
100 |
Q |
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| T |
36519375 |
caacaaggcaaaacaagatactccagattttgttctatgtttccttcacaagatgctaaagatgtgttatttatatcattcacaacaaaaatgtgttatt |
36519276 |
T |
|
| Q |
101 |
atttcttatgaaaattcaaggaccaacatgaaacatccacatttaagtgcctttttcatgtggggaaataattgaaacagacaagttcaacaacagctat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36519275 |
atttcttatgaaaattcaaggaccaacatgaaacatccacatttaagtgcctttttcatgtggggaaataattgaaacagacaagttcaacaacagctaa |
36519176 |
T |
|
| Q |
201 |
aacaatcttatttactattatt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
36519175 |
aacaatcttatttactattatt |
36519154 |
T |
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