View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6187_low_2 (Length: 462)
Name: NF6187_low_2
Description: NF6187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6187_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 13 - 444
Target Start/End: Complemental strand, 17408064 - 17407633
Alignment:
| Q |
13 |
aaaatcactcaaaccttcaaattccggcacaactttctccgagttttcaccggtagcaaccacaagccacctacaaatatattcaacttcaacaacttta |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17408064 |
aaaatcactcaaaccttcaaattccggcacaactttctccgagttttcaccggtagcaaccacaagccacctacaaatatactcaacttcaacaacttta |
17407965 |
T |
|
| Q |
113 |
tcactttttatcctattgctcttaatcctccaaagaccaaaggtttcatcatacttagcagaaagcactgtttcattgaaatttggtgttatgttaaagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17407964 |
tcactttttatcctattgctcttaatcctccaaagaccaaaggtttcatcatacttagcagaaagcactgtttcattgaaatttggtgttatgttaaagt |
17407865 |
T |
|
| Q |
213 |
ttttcgcatatgattcgaggtaacttatgaactgaaattttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17407864 |
ttttcgcatatgattcgaggtaacttatgaactgaaattttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgttt |
17407765 |
T |
|
| Q |
313 |
agggaggtgaagtttaagacgatcgtaggttcgattctgccaaagcgaagcaatgcagttagctcgttcgaggacgacaaaaggaacattttggtcctta |
412 |
Q |
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| T |
17407764 |
aggaagatgaagtttaagacgatcgtaggttcgattctgccaaagcgaggcaatgcagttagctcgttcgaggacgacaaaaggaacattttggtctttc |
17407665 |
T |
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| Q |
413 |
agacaagctgcaactgctaagcctgatggacc |
444 |
Q |
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| T |
17407664 |
aaacaagctgcaactgctaagcctgatggacc |
17407633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 29857847 - 29857896
Alignment:
| Q |
278 |
gggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt |
327 |
Q |
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||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
29857847 |
gggaatggaaagttaggtagttgacagaattgtttagggaggtgaagttt |
29857896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 29857640 - 29857684
Alignment:
| Q |
59 |
tcaccggtagcaaccacaagccacctacaaatatattcaacttca |
103 |
Q |
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||||| ||||||||||||||| ||||||||||||| ||||||||| |
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| T |
29857640 |
tcaccagtagcaaccacaagcgacctacaaatatactcaacttca |
29857684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 39733577 - 39733624
Alignment:
| Q |
56 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
103 |
Q |
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||||| ||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
39733577 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39733624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 39839381 - 39839334
Alignment:
| Q |
56 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
103 |
Q |
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||||| ||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
39839381 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39839334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 39839210 - 39839134
Alignment:
| Q |
251 |
tttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt |
327 |
Q |
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|||||||||||||||||||| | ||||| | ||||| || ||||||||||| |||||||| || ||||||||||| |
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| T |
39839210 |
tttgaagggtattcagggaaatcttcaggcattggaaggttaggtagttgacagaattgttttggaaggtgaagttt |
39839134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 31290123 - 31290047
Alignment:
| Q |
251 |
tttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt |
327 |
Q |
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|||||||||||||||||||| | ||| | | ||||| || ||||||||||| ||| ||||||| ||||||||||| |
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| T |
31290123 |
tttgaagggtattcagggaaatcttcaagcattggaaggttaggtagttgacataatggtttaggaaggtgaagttt |
31290047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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