View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6187_low_20 (Length: 228)
Name: NF6187_low_20
Description: NF6187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6187_low_20 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 111758 - 111536
Alignment:
| Q |
1 |
aaaggagttgaagaataagaattcaacaaattcagttgaacgagaaaaatattaacttaacaactaataaagaatac------attaacaatacactaat |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| || ||| |
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| T |
111758 |
aaaggagttgaagaataagaattcaacaaattcagttgaatgagaaaaatattaacttaacaactaataaagaataccagctgattaataattaac-aat |
111660 |
T |
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| Q |
95 |
tatttattcatagcatgatttgatgatacataaaagtggatatgagctcatttcatatggaaagaatcttaattaattaaaactaaagaccaaagtgcta |
194 |
Q |
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| T |
111659 |
acactaatcatagcatgatttgatgatatatacaggtggatatgagctcatttcatatggaaagaatcttaattaattaaaactaaagaccaaagtgcta |
111560 |
T |
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| Q |
195 |
tgatgactagctaactaacctttg |
218 |
Q |
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|||||||||||||||||||||||| |
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| T |
111559 |
tgatgactagctaactaacctttg |
111536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 41143553 - 41143775
Alignment:
| Q |
1 |
aaaggagttgaagaataagaattcaacaaattcagttgaacgagaaaaatattaacttaacaactaataaagaatac------attaacaatacactaat |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| || ||| |
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| T |
41143553 |
aaaggagttgaagaataagaattcaacaaattcagttgaatgagaaaaatattaacttaacaactaataaagaataccagctgattaataattaac-aat |
41143651 |
T |
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| Q |
95 |
tatttattcatagcatgatttgatgatacataaaagtggatatgagctcatttcatatggaaagaatcttaattaattaaaactaaagaccaaagtgcta |
194 |
Q |
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|| ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41143652 |
acactaatcatagcatgatttgatgatatatacaggtggatatgagctcatttcatatggaaagaatcttaattaattaaaactaaagaccaaagtgcta |
41143751 |
T |
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| Q |
195 |
tgatgactagctaactaacctttg |
218 |
Q |
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|||||||||||||||||||||||| |
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| T |
41143752 |
tgatgactagctaactaacctttg |
41143775 |
T |
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