View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6187_low_6 (Length: 378)
Name: NF6187_low_6
Description: NF6187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6187_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 7 - 364
Target Start/End: Complemental strand, 55971873 - 55971516
Alignment:
| Q |
7 |
gttataacatcgaggtgaaccaaatccaaatcctttttacatcttttcctcaacatcttcaagtaatagatgttaagtgatgggtcaggtttaccagttc |
106 |
Q |
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| T |
55971873 |
gttataacatcaaggtgaaccaaatccaaatcctttttacatcttttccttaacatcttcaagtaatagatgttaagtgatgggtcaggtttaccagttc |
55971774 |
T |
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| Q |
107 |
cattgaaattgtaaatcctactcataacagaataacaagtgcttctcccaattgtgtgtgaacctgagagagtaaccaaatcaagcatgtcaagtcctct |
206 |
Q |
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| T |
55971773 |
cattgaaattgtaaatcctattcataacagaataacaagtgcttctcccaattgtgtgtgaacctgagagagtaaccaaatcaagcatgtcaagtcctct |
55971674 |
T |
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| Q |
207 |
ttcttgaaaaaattcaatcaaacctgtgatattttcatgtccttgtggaaccaaattggcttctttggctattgaaatcttgccgtcttttcggccgaat |
306 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55971673 |
ttcttgaaaaaatccaatcaaacctgtgatattttcatgtccttgtggaaccaaattggcttctttggctattgaaatcttgccgtcttttcggccgaat |
55971574 |
T |
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| Q |
307 |
ggaacttcccaaaatggtcctcctgctaaaatggttgcatctcttgtagcagcagtga |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55971573 |
ggaacttcccaaaatggtcctcctgctaaaatggttgcatctcttgtagcagcagtga |
55971516 |
T |
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