View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6187_low_7 (Length: 329)
Name: NF6187_low_7
Description: NF6187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6187_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 42911110 - 42910794
Alignment:
| Q |
1 |
tgtatgcaaaccttcaattatttgatttgtctaattttannnnnnn-gctaattaaacatccaaaaacctagctatttcctcaattagacattttgagta |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42911110 |
tgtatgcaaaccttcaattatttgatttgtctaattttattttttttgctaattaaacatccaaaaacctagctatttcctcaattagacattttgagta |
42911011 |
T |
|
| Q |
100 |
taatagtttattgaatatgacttaaaatgggtgaatgtttgatcaaaaatttgatcctaagactcccttacatgtaaggtttaatgctatatttagatta |
199 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42911010 |
taataatttattgaatatgacttaaaatgggtgaatgtttgatcaaaaatttgatcctaagactcccttacatgtaaggtttaatgctatatttggatta |
42910911 |
T |
|
| Q |
200 |
ttttgtttgtgaaattgtgttgttaatgatgaattgtaggtgactagtggaaaattgttgaagacttggacagctcattataaatctatagaccacataa |
299 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42910910 |
ttttgtttgtgaaattgtgttgtttatgatgaattgtaggtgactagtggaaaattgttgaagacttggacagctcattataaatctgtagaccacataa |
42910811 |
T |
|
| Q |
300 |
tattttctaatgatgat |
316 |
Q |
| |
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||||||||||||||||| |
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| T |
42910810 |
tattttctaatgatgat |
42910794 |
T |
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