View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6188_high_1 (Length: 723)

Name: NF6188_high_1
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6188_high_1
NF6188_high_1
[»] chr8 (1 HSPs)
chr8 (18-707)||(24821128-24821800)


Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 707
Target Start/End: Original strand, 24821128 - 24821800
Alignment:
Q  18 atccatgtgtgctctataatgatctgtgacaacgtgacccttcattggtacgaacatcataggaccgaggtgtcaatcctccttgtaagattaaacaaaa 117  Q
    ||||||||| ||||||||| ||| |||||||||| ||||||||| | |||| ||||||| |||||||||||||||||||||||||||||||| |||||||    
T  24821128 atccatgtgcgctctataaggatatgtgacaacgagacccttcactagtacaaacatcaaaggaccgaggtgtcaatcctccttgtaagattgaacaaaa 24821227  T
Q  118 tatgcccaccagcattatctctattcagcaaagtcttcctcctccttcctctattttaatattaatattaaacaacacttcaaagtgaaaattcttctct 217  Q
    | ||| ||||||||||||||  |||||||||| ||||||||          | ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  24821228 tctgcacaccagcattatct--attcagcaaaatcttcctc----------tcttttaatat-aatattaaacagcacttcaaagtgaaaattcttctct 24821314  T
Q  218 taattaggaacatgaccatccaaaattgacttctccatcatcatgcattcaaacaaaattgttaaaacgatcaaattgttaccnnnnnnnnntagaatcc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||          ||||||||    
T  24821315 taattaggaacatgaccatccaaaattgacttctccatcatcatgcatttaaacaaaattgttaaaacgatcaaattgtgac--aaaaaatatagaatcc 24821412  T
Q  318 aaaatggtgtacatagtttactaaatttaaagaatataaaaagtatcagctatatacctataccctaaaaccggatcttgacaggttgtcctacactact 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||||    
T  24821413 aaaatggtgtacatagtttactaaatttaaagaatataaaaagtagcagctaaatactt-taccctaaaaccggatcttgacaggttgtcctacactact 24821511  T
Q  418 tttgcatgcagataactaattcttatactctccaaaatgcaggaacagccaggacaataatctaaaatggaattaggtagaataattcaattcatgtcac 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24821512 tttgcatgcagataactaattcttatactctccaaaatgcaggaacagccaggacaataatctaaaatggaattaggtagaataattcaattcatgtcac 24821611  T
Q  518 attnnnnnnnntgtgtcagtgtcacccatgttactaaagaatgtgtgtattatatagcaaccctggtccttatcttcagtttgccctcattttagagtaa 617  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24821612 attaaaaaaaatgtgtcagtgtcacccatgttactaaagaatgtgtgtattatatagcaaccctggtccttatcttcagtttgccctcattttagagtaa 24821711  T
Q  618 catctcaccgacacaaacacaatggcactaaactccaatttctacacgcattccaaagtttttctttctttgaataagtacacccaatga 707  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  24821712 catctcaccgacacaaacacaatggcactaaactccaaattctacacgcattcgaaa-tttttctttctttgaataagtacacccaatga 24821800  T

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