View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_high_11 (Length: 335)
Name: NF6188_high_11
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 32906716 - 32907017
Alignment:
| Q |
14 |
catcagctgaacaaatccaacaaattgcttcgcagcttcgacaattcgggaagattgaaggaaaaaatgtgttctattggttccagaatcacaaggcgag |
113 |
Q |
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| T |
32906716 |
catcagctgaacaaatccaacaaattgcttcgcagcttcgacaattcgggaagattgaaggaaaaaatgtgttctattggttccagaatcacaaggcgag |
32906815 |
T |
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| Q |
114 |
agagcgacagaagcgtcgtcgccttgagatggaggaaacaactgaagataaaaaagagaaagagaagtacgttatgggaaattcagaaaagcaagaaggt |
213 |
Q |
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| T |
32906816 |
agagcgacagaagcgtcgtcgccttgagatggaggaaacaactgaagataaaaaagagaaagagaagtacgttatgggaaattcaaaaaagcaagaaggt |
32906915 |
T |
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| Q |
214 |
gcaggtatacagctagatattatctttagggctattcaaggttcttttagtggtcaaaagattcctatattatatttcactcatgacattacaagttaca |
313 |
Q |
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| T |
32906916 |
gcaggtatacagctagatattatctttagggctattcaaggttcttttagtggtcaaaagattcctatattatatttcactcatgacattacaagttaca |
32907015 |
T |
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| Q |
314 |
gc |
315 |
Q |
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|| |
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| T |
32907016 |
gc |
32907017 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 45304928 - 45304831
Alignment:
| Q |
19 |
gctgaacaaatccaacaaattgcttcgcagcttcgacaattcgggaagattgaaggaaaaaatgtgttctattggttccagaatcacaaggcgagaga |
116 |
Q |
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| T |
45304928 |
gctgagcaaatccaacaaataactgcccagcttagaaaatttggaaaaattgaaggcaaaaatgttttctattggtttcagaatcacaaagcaagaga |
45304831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 40005009 - 40004912
Alignment:
| Q |
19 |
gctgaacaaatccaacaaattgcttcgcagcttcgacaattcgggaagattgaaggaaaaaatgtgttctattggttccagaatcacaaggcgagaga |
116 |
Q |
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| T |
40005009 |
gctgagcaaatccaacaaatcactgcccagcttagaaaaattggaaaaattgaaggcaaaaatgttttctattggtttcagaatcacaaagccagaga |
40004912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 40220537 - 40220634
Alignment:
| Q |
19 |
gctgaacaaatccaacaaattgcttcgcagcttcgacaattcgggaagattgaaggaaaaaatgtgttctattggttccagaatcacaaggcgagaga |
116 |
Q |
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| T |
40220537 |
gctgagcaaatccaacagatcactgcccagcttagaaaatttggaaaaattgaaggcaaaaatgttttctattggtttcagaatcacaaagccagaga |
40220634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 21930134 - 21930094
Alignment:
| Q |
70 |
gaaggaaaaaatgtgttctattggttccagaatcacaaggc |
110 |
Q |
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| T |
21930134 |
gaaggaaaaaatgttttctattggtttcagaatcataaggc |
21930094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 5704969 - 5705009
Alignment:
| Q |
67 |
attgaaggaaaaaatgtgttctattggttccagaatcacaa |
107 |
Q |
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| T |
5704969 |
attgaagggaaaaatgtgttctattggttccaaaaccacaa |
5705009 |
T |
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