View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_high_12 (Length: 331)
Name: NF6188_high_12
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 8039477 - 8039176
Alignment:
| Q |
18 |
gatttgtgcaataacttatgcaaggaattcggatggtaagaggagcaactactatacaatctaatcaacagcaacttagcaagacaggagaaattatagg |
117 |
Q |
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| T |
8039477 |
gatttgtgcaataacttatgcaaggaattcggatggtaagaggagcaactactatacaatctaatcaacagcaacttagcaagacaggagaaattatagg |
8039378 |
T |
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| Q |
118 |
cgtgtcatcaggtgtcgtaaattttagaaacatttttagcagacataataagactatatggggtcacaattaatcattccatcttgtgcttagttacaat |
217 |
Q |
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| T |
8039377 |
cgtgtcatcaggtgtcttaaattttagaaacatttttagcagacataataagactatatggggtcacaattaatcattccatcttgtgcttagttacaat |
8039278 |
T |
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| Q |
218 |
ta---attagtaaaatgtaacctttcaatgaggcagcaccaagaaagtaaaagcatttgtcctttgccatgctgcctttgccttggtgagtggtgatgct |
314 |
Q |
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| T |
8039277 |
taaatattagtaaaatgtaacctgtcaatgaggcagcaccaagaaagtaaaagcatttctcctttgccatgc------tgccttggtgagtggtgatgct |
8039184 |
T |
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| Q |
315 |
attttctt |
322 |
Q |
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|||||||| |
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| T |
8039183 |
attttctt |
8039176 |
T |
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