View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6188_high_16 (Length: 310)

Name: NF6188_high_16
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6188_high_16
NF6188_high_16
[»] chr2 (1 HSPs)
chr2 (1-294)||(28624758-28625051)
[»] chr8 (1 HSPs)
chr8 (5-150)||(29157748-29157893)
[»] chr5 (4 HSPs)
chr5 (200-286)||(40419619-40419705)
chr5 (197-279)||(17940724-17940806)
chr5 (197-279)||(32666833-32666915)
chr5 (197-279)||(20030712-20030794)
[»] scaffold0089 (1 HSPs)
scaffold0089 (197-279)||(35986-36068)
[»] chr6 (1 HSPs)
chr6 (197-279)||(20515000-20515082)
[»] chr3 (3 HSPs)
chr3 (197-279)||(13370062-13370144)
chr3 (5-59)||(11982162-11982216)
chr3 (5-59)||(18770395-18770449)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 28624758 - 28625051
Alignment:
Q  1 agattaaatcaaagaatccacaaatgctgaaacaagcaagatgattagacatccattgagcaattaaatatttgaaacattgttctttttgccacactgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  28624758 agattaaatcaaagaatccacaaatgctgaaacaagcaagatgattagacatccattgagcaatcaaatatttgaaacatttttctttttcccacactgc 28624857  T
Q  101 tttaccaaagaattaaactaacagcctctacgggagtagtaaattagacacaaaccactatttatatgcatttggccaatccacataaatagtggttttt 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28624858 tttaccaaagaattaaactaacagcctgtacgggagtagtaaattagacacaaaccactatttatatgcatttggccaatccacataaatagtggttttt 28624957  T
Q  201 taagtatataatctggtctcaaagccttagggatgtatcaaaactggtttatataactcttgtactcaaatatgactagatttactcaaaaata 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28624958 taagtatataatctggtctcaaagccttagggatgtatcaaaactggtttatataactcttgcactcaaatatgactagatttactcaaaaata 28625051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 29157893 - 29157748
Alignment:
Q  5 taaatcaaagaatccacaaatgctgaaacaagcaagatgattagacatccattgagcaattaaatatttgaaacattgttctttttgccacactgcttta 104  Q
    ||||||||| ||||||| ||||   ||||||||||||||| ||||||||||||||  |||  || ||||||||||||  |||||||||||||||||||||    
T  29157893 taaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaagaatcgaagatttgaaacatttatctttttgccacactgcttta 29157794  T
Q  105 ccaaagaattaaactaacagcctctacgggagtagtaaattagaca 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29157793 ccaaagaattaaactaacagcctctacgggagtagtaaattagaca 29157748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 200 - 286
Target Start/End: Original strand, 40419619 - 40419705
Alignment:
Q  200 ttaagtatataatctggtctcaaagccttagggatgtatcaaaactggtttatataactcttgtactcaaatatgactagatttact 286  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| ||||||    
T  40419619 ttaagtatataatcgtgtctcaaagccttagggatgtagcaaaactggtttatataactcttgcactcaaatatggctagttttact 40419705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 17940806 - 17940724
Alignment:
Q  197 tttttaagtatataatctggtctcaaagccttagggatgtatcaaaactggtttatataactcttgtactcaaatatgactag 279  Q
    |||||||||||| ||||| |||| ||||||||||||||| | ||||| |||||||| |||||||||  ||||| |||| ||||    
T  17940806 tttttaagtatacaatcttgtctgaaagccttagggatgcagcaaaattggtttatctaactcttgatctcaattatggctag 17940724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 32666833 - 32666915
Alignment:
Q  197 tttttaagtatataatctggtctcaaagccttagggatgtatcaaaactggtttatataactcttgtactcaaatatgactag 279  Q
    |||||||||||| ||||| |||| ||||||||||||||| | ||||| |||||||| |||||||||  ||||| |||| ||||    
T  32666833 tttttaagtatacaatcttgtctgaaagccttagggatgcagcaaaattggtttatctaactcttgatctcaattatggctag 32666915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 20030712 - 20030794
Alignment:
Q  197 tttttaagtatataatctggtctcaaagccttagggatgtatcaaaactggtttatataactcttgtactcaaatatgactag 279  Q
    |||||||||||| ||||| |||| ||||| ||||||||| | ||||| |||||||| |||||||||  ||||| |||| ||||    
T  20030712 tttttaagtatacaatcttgtctgaaagctttagggatgcagcaaaattggtttatctaactcttgatctcaattatggctag 20030794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 35986 - 36068
Alignment:
Q  197 tttttaagtatataatctggtctcaaagccttagggatgtatcaaaactggtttatataactcttgtactcaaatatgactag 279  Q
    |||||||||||| ||||| |||| ||||||||||||||| | ||||| |||||||| |||||||||  ||||| |||| ||||    
T  35986 tttttaagtatacaatcttgtctgaaagccttagggatgcagcaaaattggtttatctaactcttgatctcaattatggctag 36068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 20515000 - 20515082
Alignment:
Q  197 tttttaagtatataatctggtctcaaagccttagggatgtatcaaaactggtttatataactcttgtactcaaatatgactag 279  Q
    |||||||||||| ||||| |||| ||||||||||||||| | ||||| |||||||| |||||||||  ||||| |||| ||||    
T  20515000 tttttaagtatacaatcttgtctgaaagccttagggatgcagcaaaattggtttatctaactcttgatctcaattatggctag 20515082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 13370144 - 13370062
Alignment:
Q  197 tttttaagtatataatctggtctcaaagccttagggatgtatcaaaactggtttatataactcttgtactcaaatatgactag 279  Q
    |||||||||||| ||||| |||| ||||||||||||||| | ||||| |||||||| |||||||||  ||||| |||| ||||    
T  13370144 tttttaagtatacaatcttgtctgaaagccttagggatgcagcaaaattggtttatctaactcttgatctcaattatggctag 13370062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 11982162 - 11982216
Alignment:
Q  5 taaatcaaagaatccacaaatgctgaaacaagcaagatgattagacatccattga 59  Q
    ||||||||| ||||||| ||||   ||||||||||||||| ||||||||||||||    
T  11982162 taaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattga 11982216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 18770449 - 18770395
Alignment:
Q  5 taaatcaaagaatccacaaatgctgaaacaagcaagatgattagacatccattga 59  Q
    ||||||||| ||||||| ||||   ||||||||||||||| ||||||||||||||    
T  18770449 taaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattga 18770395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University