View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_high_18 (Length: 267)
Name: NF6188_high_18
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 34040916 - 34041171
Alignment:
| Q |
1 |
attatcaatttataaaagaaatcattaaattagtgtgatctgagtgataagcagctcatataatatgaatacgtgatcatatatttgatcttgtttatta |
100 |
Q |
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| T |
34040916 |
attatcaatttataaaagaaatcattaaattagtgtgatctgagtgataagcagctcatataatatgaatacgtgatcatatatttgatcttgtttatta |
34041015 |
T |
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| Q |
101 |
tnnnnnnnntcactgtttaagaacagaagttctatatattgtaattaattgcaatacaagttcttttgttatttaaaatgaggtggatttggataagaag |
200 |
Q |
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| T |
34041016 |
taaaaaaa-tcactgtttaagaacagaagttctatatattgtaattaattgcaatacaagttcttttgttatttaaaatgaggtggatttggataagaag |
34041114 |
T |
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| Q |
201 |
attgacttggactcataagtcatgaagggttggtgtttcaatatatgtggagaataa |
257 |
Q |
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| T |
34041115 |
attgacttggactcataagtcatgaagggttggtgtttcaatatatgtggagaataa |
34041171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 34042766 - 34042831
Alignment:
| Q |
166 |
ttgttatttaaaatgaggtggatttggataagaagattgacttggactcataagtcatgaagggtt |
231 |
Q |
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| T |
34042766 |
ttgttatttagaatgaggtggatttagataagaagattgacttggacttgcaagccatgaagggtt |
34042831 |
T |
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