View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_high_22 (Length: 248)
Name: NF6188_high_22
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 7560459 - 7560228
Alignment:
| Q |
1 |
tggtgtcaatcgctagttgaacaatttaggatggaattttgacgatgatggttggaaatggcggcgtatgttattaacttgggatgaggaacaagtgagg |
100 |
Q |
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| T |
7560459 |
tggtgtcaatcgctagttgaacaatttaggatggaattttgactatgatggttggaaatggcggcgtatgttattaacttgggatgaggaacaagtgagg |
7560360 |
T |
|
| Q |
101 |
aagtgttgtaatttattgtataacattttttgcatgtcaatgagcacgataagtgggattgaaagttcaatcctattcaaggttatacagttagtagagt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7560359 |
gagtgttataatttattgtataacattttttgcatgtcaatgaacacgataagtgggattgaaagttcaatcctagtcaaggttatacagttagtagagt |
7560260 |
T |
|
| Q |
201 |
atatcattttttgtctaatgtggagcatctcg |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7560259 |
atatcattttttgtctaatgtggagcatctcg |
7560228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 6319375 - 6319295
Alignment:
| Q |
148 |
gataagtgggattgaaagttcaatcctattcaaggttatacagttagtagagtatatcattttttgtctaatgtggagcat |
228 |
Q |
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| T |
6319375 |
gataagtgggattggaagctcaatactcgggaaggttatacagttactggagtatatcatttgttgtctaatgtggagcat |
6319295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 6319706 - 6319626
Alignment:
| Q |
148 |
gataagtgggattgaaagttcaatcctattcaaggttatacagttagtagagtatatcattttttgtctaatgtggagcat |
228 |
Q |
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| T |
6319706 |
gataagtgggattggaagctcaatactcgggaaggttgtacaattagtggagtatatcatttgttgtctaatgtggagcat |
6319626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 11760806 - 11760887
Alignment:
| Q |
148 |
gataagtgggattgaaagttcaatcctattcaaggttatacagttagtagagtatatcattttttgtctaatgtggagcatc |
229 |
Q |
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|||||| ||||||| ||||||||||| | ||||||||||| ||||| ||| ||| ||||| ||||||||||||||||||| |
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| T |
11760806 |
gataagggggattggaagttcaatccgtatgaaggttatacaattagtggaggatagcatttattgtctaatgtggagcatc |
11760887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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