View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_high_26 (Length: 241)
Name: NF6188_high_26
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 4494867 - 4495081
Alignment:
| Q |
12 |
cataggtaacgatgcttgaagtacaataaaaacacgagattttagcggcaacaacttcaacaattcatcaagaacaaacccttttggatcagacaaagaa |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4494867 |
catagctaacgatgcttgaagtacaataaaaacacgagattttagcggcaacaacttcaacaattcatcaagaacaaacccttttggatcagacaaagaa |
4494966 |
T |
|
| Q |
112 |
gtgaatgaaggaagaactaactgatactcaatctgggagttaaccttttggagagcctcggataagaggcttaacattccagaatcactattataagggt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4494967 |
gtgaatgaaggaagaactaactgatactcaatctgggagttaaccttttggagagcctcggataagaggcttaaccttccagaatcactattataagggt |
4495066 |
T |
|
| Q |
212 |
tgtcttcatatatag |
226 |
Q |
| |
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||||||||||||||| |
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| T |
4495067 |
tgtcttcatatatag |
4495081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 4500435 - 4500649
Alignment:
| Q |
12 |
cataggtaacgatgcttgaagtacaataaaaacacgagattttagcggcaacaacttcaacaattcatcaagaacaaacccttttggatcagacaaagaa |
111 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4500435 |
cataggtaatgatgcttgaagtacaataaaaacacgagattttagcctcaacaacttcaacaattcatcaagaacaaacccttttggatcagataaagaa |
4500534 |
T |
|
| Q |
112 |
gtgaatgaaggaagaactaactgatactcaatctgggagttaaccttttggagagcctcggataagaggcttaacattccagaatcactattataagggt |
211 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
4500535 |
gtgaatggtggaagaactaattgatactcaatctgggagttaaccttttggagagcctcggataagaggcttaacattccaaaatcactattgtaagggt |
4500634 |
T |
|
| Q |
212 |
tgtcttcatatatag |
226 |
Q |
| |
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| ||||||||||||| |
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| T |
4500635 |
tctcttcatatatag |
4500649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 4507676 - 4507890
Alignment:
| Q |
12 |
cataggtaacgatgcttgaagtacaataaaaacacgagattttagcggcaacaacttcaacaattcatcaagaacaaacccttttggatcagacaaagaa |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || |||||| |
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| T |
4507676 |
cataggtaatgatgcttgaagtacaataaaaacacgagattttagccgcaacaacttcaacagttcatcaagaacaaacccttttggatctgataaagaa |
4507775 |
T |
|
| Q |
112 |
gtgaatgaaggaagaactaactgatactcaatctgggagttaaccttttggagagcctcggataagaggcttaacattccagaatcactattataagggt |
211 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||| |||||||| ||||||| | |
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|
| T |
4507776 |
gtgaatggtggaagaactaatcgatactcaatcttcgagttaaccttttcgagagcctccgataagaggtttaacattccaaaatcactactataaggat |
4507875 |
T |
|
| Q |
212 |
tgtcttcatatatag |
226 |
Q |
| |
|
||||||||||||||| |
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|
| T |
4507876 |
tgtcttcatatatag |
4507890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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