View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_high_3 (Length: 574)
Name: NF6188_high_3
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 8647161 - 8647712
Alignment:
| Q |
1 |
gaatggaagataaagataactagtcatagaatggcatacttataaaaaattaagtaccattaagaatagtttccaattcatcttatgaaattcacattta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8647161 |
gaatggaagataaagataactagtcatagaatggcatacttataaaaaattaagtaccattaagaatagtttccaattcatctcatgaaattcacattta |
8647260 |
T |
|
| Q |
101 |
atttaataatcatatggctatccagaagggtatgttcatatccaaatgtttttaaacttcgaatcatggaccaataaaattgactatgtactaaataaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8647261 |
atttaataatcatatggctatccagaagggtatgttcatatccaaatgtttttaaacttcgaatcatggaccaataaaattgactatgtactaaataaat |
8647360 |
T |
|
| Q |
201 |
tagataaattaacaccaaagaaaaggaagcacgtaaaaacagaggaaaaggaattaccttgaaaagggcaagccaaggcaatccacttattcacatattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8647361 |
tagataaattaacaccaaagaaaaggaagcacgtaaaaacag--gaaaaggaattaccttgaaaagggcaagccaaggcaatccacttattcacatattt |
8647458 |
T |
|
| Q |
301 |
tgaaaacacctgccaagcaacaacataaataaccaccgattccactttgattttcagcacgagtttcagaagtagtgatggagaaaaactagtttccaac |
400 |
Q |
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| T |
8647459 |
tgaaaacacctgccaagcaacaacataaataaccaccgattccactttgattttcagcacgagtttcagaagtagtgatggagaaaaactagtttccaac |
8647558 |
T |
|
| Q |
401 |
tattctagatagccacatggagtgtgtaattatattgacttttcttcgtaagcagtttccaactatgaaagccctggagaagatcaagcttctattttgg |
500 |
Q |
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| T |
8647559 |
tattctggatagccacatggagtgtgtaattatattgacttttcttcgtaagcagtttccaactatgaaagccctggagaagatcaagcttctattttgg |
8647658 |
T |
|
| Q |
501 |
accgctagtcatgattcactccccactaatgcgcttttgcaccatcgcggtata |
554 |
Q |
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| T |
8647659 |
accgctagtcatgattcactccccactaatgcgcttttgcaccatcgcggtata |
8647712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 30607405 - 30607061
Alignment:
| Q |
1 |
gaatggaagataaagataactagtcatagaatggcatacttataaaaaattaagtaccattaagaatagtttccaattcatcttatgaaattcacattta |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||| |||| |||||||||||||| |||||||||||||||| |
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| T |
30607405 |
gaatggaagataaagataactagtcatagaatgacatacttatcaataattaagtaccattaataatattttccaattcatctcatgaaattcacattta |
30607306 |
T |
|
| Q |
101 |
atttaataatcatatggctatccagaagggtatgttcatatccaaatgtttttaaacttcgaatcatggaccaataaaattgactatgtactaaataaat |
200 |
Q |
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|||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
30607305 |
atttaataatcaaatggctatcaaaaaggg-atgttcatatccaaatgtttttaaacttcgagtcatggaccaataaaattgactatgtactaaacaaat |
30607207 |
T |
|
| Q |
201 |
tagataaattaacaccaaagaaaaggaagcacgtaaaaacagaggaaaaggaattaccttgaaaagggcaagccaaggcaatccacttattcacatattt |
300 |
Q |
| |
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| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30607206 |
t----------acaccaaagaaaaggaagcacgtaaaaacagaagaaaaggaattaccttgaaaagggcaagccaaggcaatccacttattcacgtattt |
30607117 |
T |
|
| Q |
301 |
tgaaaacacctgccaagcaacaacataaataaccaccgattccactttgattttca |
356 |
Q |
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|
| T |
30607116 |
tgaaaacacctgccaagcaacaacataaataaccaccgattccactttgattttca |
30607061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 19721920 - 19722008
Alignment:
| Q |
465 |
atgaaagccctggagaagatcaagcttctattttggaccgctagtcatgattcactccccactaatgcgcttttgcaccatcgcggtat |
553 |
Q |
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|||||||||| |||||||||||| | || |||||||||||||| |||| ||||||||||||||| ||||||||||||| ||||||||| |
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| T |
19721920 |
atgaaagccccagagaagatcaagttccttttttggaccgctagccatgtttcactccccactaaagcgcttttgcaccgtcgcggtat |
19722008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 478 - 553
Target Start/End: Complemental strand, 12288726 - 12288650
Alignment:
| Q |
478 |
agaagatcaagcttctattttggaccgctagtcatgattcact-ccccactaatgcgcttttgcaccatcgcggtat |
553 |
Q |
| |
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||||||||||| | || |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
12288726 |
agaagatcaagttgcttttttggaccgttagtcatgattcactcccccactaaagcgcttttgcaccatcgcggtat |
12288650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 553
Target Start/End: Original strand, 29312451 - 29312528
Alignment:
| Q |
476 |
ggagaagatcaagcttctattttggaccgctagtcatgattcactccccactaatgcgcttttgcaccatcgcggtat |
553 |
Q |
| |
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||||||||||||| | | ||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||||||| |
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| T |
29312451 |
ggagaagatcaagttgttcttttggaccactagtcatgattcgctccccactaaagtgcttttgcaccgtcgcggtat |
29312528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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