View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6188_high_33 (Length: 210)
Name: NF6188_high_33
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_high_33 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 33513063 - 33512868
Alignment:
| Q |
15 |
aatatcatttcacatcactaggaattatcaagttatatagcctcgacaattttaaagttatgaatctactatttgtgtttctatatggccaaccatggtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33513063 |
aatatcatttcacatcactaggaattatcaagttatatagcctcaacaattttaaagttatgaatctactatttgtgtttctatatggccaaccatggtt |
33512964 |
T |
|
| Q |
115 |
caaatttcatttagaggataaggccacatttagtgtatgatagtgctatatatatgaacgtggaagaaatctaaggagtaaaaaagatacgcacta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33512963 |
caaatttcatttagaggataaggccacatttagtgtatgatagtgctatatatatgaacgtggaagaaatctaaggagtaaaaaagatacgcacta |
33512868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University