View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6188_high_6 (Length: 403)

Name: NF6188_high_6
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6188_high_6
NF6188_high_6
[»] scaffold0262 (2 HSPs)
scaffold0262 (279-396)||(4128-4245)
scaffold0262 (90-250)||(4274-4434)
[»] chr8 (14 HSPs)
chr8 (278-396)||(40463352-40463470)
chr8 (157-250)||(40463496-40463590)
chr8 (90-147)||(14099745-14099801)
chr8 (90-142)||(42480898-42480949)
chr8 (90-142)||(9755684-9755736)
chr8 (90-144)||(40462270-40462324)
chr8 (90-142)||(14101091-14101143)
chr8 (90-145)||(38980157-38980211)
chr8 (90-145)||(39011254-39011308)
chr8 (315-368)||(26521794-26521847)
chr8 (90-142)||(3917796-3917847)
chr8 (90-142)||(3923610-3923662)
chr8 (90-142)||(38973753-38973804)
chr8 (90-142)||(39004851-39004902)
[»] chr4 (32 HSPs)
chr4 (1-89)||(11850608-11850695)
chr4 (314-396)||(47862550-47862633)
chr4 (88-250)||(47861931-47862095)
chr4 (90-147)||(20673565-20673622)
chr4 (89-142)||(23506385-23506438)
chr4 (90-142)||(1997060-1997112)
chr4 (90-142)||(16314203-16314255)
chr4 (89-142)||(5169312-5169365)
chr4 (89-142)||(17288630-17288683)
chr4 (90-142)||(23504895-23504947)
chr4 (90-145)||(43742021-43742076)
chr4 (90-142)||(39661319-39661371)
chr4 (91-142)||(56083355-56083405)
chr4 (91-141)||(6657482-6657532)
chr4 (90-144)||(12861412-12861465)
chr4 (89-134)||(2753075-2753120)
chr4 (89-142)||(5170387-5170440)
chr4 (90-142)||(1995868-1995920)
chr4 (90-142)||(12862716-12862768)
chr4 (90-142)||(16312647-16312699)
chr4 (90-134)||(17288766-17288810)
chr4 (90-138)||(24686525-24686573)
chr4 (87-142)||(6872604-6872659)
chr4 (90-140)||(20674816-20674866)
chr4 (90-143)||(24127586-24127638)
chr4 (109-146)||(39660389-39660425)
chr4 (156-223)||(47863599-47863668)
chr4 (90-142)||(2751518-2751570)
chr4 (90-142)||(6866693-6866745)
chr4 (90-142)||(24685024-24685076)
chr4 (90-142)||(44353876-44353928)
chr4 (332-368)||(52963824-52963860)
[»] chr1 (19 HSPs)
chr1 (90-250)||(24302936-24303094)
chr1 (314-396)||(24303156-24303239)
chr1 (164-250)||(9010949-9011035)
chr1 (90-250)||(17241995-17242157)
chr1 (90-142)||(21747943-21747995)
chr1 (89-142)||(42097325-42097378)
chr1 (90-146)||(42098727-42098784)
chr1 (93-146)||(43402266-43402318)
chr1 (90-142)||(13971004-13971056)
chr1 (90-142)||(17240717-17240769)
chr1 (88-143)||(9008759-9008813)
chr1 (90-142)||(43403299-43403351)
chr1 (91-143)||(49383023-49383074)
chr1 (90-142)||(35713697-35713749)
chr1 (181-224)||(48030154-48030197)
chr1 (90-141)||(48030240-48030290)
chr1 (315-368)||(35712663-35712716)
chr1 (164-223)||(24304228-24304288)
chr1 (90-142)||(51676338-51676389)
[»] chr3 (21 HSPs)
chr3 (314-396)||(11150496-11150579)
chr3 (166-250)||(11150350-11150434)
chr3 (90-142)||(36438775-36438827)
chr3 (90-146)||(48537852-48537906)
chr3 (90-142)||(15439681-15439733)
chr3 (90-142)||(34799865-34799917)
chr3 (90-142)||(42278457-42278509)
chr3 (90-142)||(36437214-36437266)
chr3 (90-142)||(37086743-37086795)
chr3 (91-141)||(11151596-11151646)
chr3 (90-142)||(15438470-15438522)
chr3 (102-142)||(34801393-34801433)
chr3 (90-142)||(37085413-37085465)
chr3 (315-368)||(34825793-34825846)
chr3 (315-368)||(46652722-46652775)
chr3 (90-141)||(13865958-13866007)
chr3 (91-146)||(14997027-14997080)
chr3 (90-142)||(30034614-30034666)
chr3 (332-368)||(37085647-37085683)
chr3 (90-142)||(39606639-39606691)
chr3 (90-142)||(48165506-48165557)
[»] chr7 (13 HSPs)
chr7 (1-89)||(29072475-29072560)
chr7 (90-250)||(5737177-5737339)
chr7 (90-142)||(12629431-12629483)
chr7 (90-142)||(21261980-21262032)
chr7 (88-142)||(5769308-5769362)
chr7 (90-142)||(12628033-12628085)
chr7 (89-142)||(47578587-47578640)
chr7 (1-89)||(3618321-3618408)
chr7 (90-142)||(19628184-19628235)
chr7 (90-142)||(21263321-21263373)
chr7 (90-145)||(7848006-7848061)
chr7 (90-143)||(23456680-23456733)
chr7 (90-142)||(23525581-23525633)
[»] chr6 (11 HSPs)
chr6 (90-142)||(21383822-21383874)
chr6 (90-142)||(25482148-25482200)
chr6 (90-142)||(32146094-32146146)
chr6 (90-142)||(12603937-12603988)
chr6 (89-145)||(12605244-12605299)
chr6 (90-140)||(5858898-5858948)
chr6 (92-142)||(26545871-26545920)
chr6 (90-139)||(9305621-9305670)
chr6 (90-142)||(21382482-21382534)
chr6 (90-142)||(25483402-25483453)
chr6 (90-142)||(35223132-35223184)
[»] chr2 (6 HSPs)
chr2 (88-145)||(29043618-29043674)
chr2 (89-137)||(25648620-25648667)
chr2 (90-145)||(29042336-29042390)
chr2 (315-395)||(18615749-18615830)
chr2 (315-395)||(29220678-29220759)
chr2 (315-395)||(29333977-29334058)
[»] scaffold0071 (2 HSPs)
scaffold0071 (90-142)||(22458-22510)
scaffold0071 (90-142)||(23669-23721)
[»] scaffold0049 (2 HSPs)
scaffold0049 (89-139)||(385-435)
scaffold0049 (90-143)||(3924-3976)
[»] scaffold0408 (1 HSPs)
scaffold0408 (90-141)||(10087-10136)
[»] scaffold0484 (2 HSPs)
scaffold0484 (90-145)||(11536-11590)
scaffold0484 (90-145)||(12797-12851)
[»] scaffold0061 (1 HSPs)
scaffold0061 (90-142)||(11256-11308)
[»] chr5 (4 HSPs)
chr5 (90-142)||(12316348-12316399)
chr5 (90-143)||(27490099-27490152)
chr5 (332-368)||(27491062-27491098)
chr5 (90-142)||(29875947-29875998)
[»] scaffold0471 (1 HSPs)
scaffold0471 (90-143)||(12192-12244)


Alignment Details
Target: scaffold0262 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 279 - 396
Target Start/End: Complemental strand, 4245 - 4128
Alignment:
Q  279 aaattccacgtggcacacataatannnnnnnnaacaaaaataatgttgaagaaatgaaatacctaaagtacccttaatgttaaattaaaatccaaattaa 378  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4245 aaattccacgtggcacacataataatttttttaacaaaaataatgttgaagaaatgaaatacctaaagtacccttaatgttaaattaaaatccaaattaa 4146  T
Q  379 ttttttcttcttcttctc 396  Q
    |||| |||||||||||||    
T  4145 ttttctcttcttcttctc 4128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 4434 - 4274
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctatggnnnnnnnncttggagattccc-cttgtcattagaagattctt 188  Q
    |||||||||||||||||  ||| |||||||| |||||||||||||||||||||||||          |||||||||||| |||| |||||||||||| ||    
T  4434 gggttaataggcttttatccccttgccatttgggggtcttttggtttaccccctatgaaatttttt-ttggagattccctcttgccattagaagattatt 4336  T
Q  189 tgatttacacccccatgccatctgattggattaatatgatgatttgacatgctgatgtgtta 250  Q
    || |||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||    
T  4335 tggtttacacccccaagccatctgattggattaatatgatgatttggcacgctgatgtgtta 4274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 278 - 396
Target Start/End: Complemental strand, 40463470 - 40463352
Alignment:
Q  278 aaaattccacgtggcacacataatannnnnnnnaacaaaaataatgttgaagaaatgaaatacctaaagtacccttaatgttaaattaaaatccaaatta 377  Q
    |||||||||||||||||||||||||        ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  40463470 aaaattccacgtggcacacataataatttttttaacaaaaataatgttgaagaaattaaatacctgaagtacccttaatgttaaattaaaatccaaatta 40463371  T
Q  378 attttttcttcttcttctc 396  Q
    ||||| |||||||||||||    
T  40463370 attttctcttcttcttctc 40463352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 40463590 - 40463496
Alignment:
Q  157 ttggagattcccc-ttgtcattagaagattctttgatttacacccccatgccatctgattggattaatatgatgatttgacatgctgatgtgtta 250  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||    
T  40463590 ttggagattcccccttaccattagaagattctttgatttacacccccaagccatctgattggattaatatgatgatttggcacgctgatgtgtta 40463496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 14099745 - 14099801
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctatgg 147  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  14099745 gggttaataggcttttac-cccctgccatttgggggtcttttggtttaccccctatgg 14099801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 42480898 - 42480949
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  42480898 gggttaataggcttttac-cccctgccatttaggggttttttggtttaccccc 42480949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 9755684 - 9755736
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||| ||||||| |||||||||||| ||||||||||||| |||||||    
T  9755684 gggttaatagacttttacccccctgccatttgggggtcttttggtataccccc 9755736  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 40462270 - 40462324
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttacccccta 144  Q
    |||||||||||||||||| |||||||||| | || | ||||||||||||||||||    
T  40462270 gggttaataggcttttacccccctgccatatgggtgacttttggtttacccccta 40462324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 14101143 - 14101091
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||| |  | ||||||||||||||||||    
T  14101143 gggttaataggcttttacccccctgccatatgagcgtcttttggtttaccccc 14101091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 38980211 - 38980157
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctat 145  Q
    ||||||||||| |||||| |||||| ||||| || |||||||||||||||||||||    
T  38980211 gggttaataggtttttac-cccctgtcatttgggagtcttttggtttaccccctat 38980157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 39011308 - 39011254
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctat 145  Q
    ||||||||||| |||||| |||||| ||||| || |||||||||||||||||||||    
T  39011308 gggttaataggtttttac-cccctgtcatttgggagtcttttggtttaccccctat 39011254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 26521847 - 26521794
Alignment:
Q  315 aaaataatgttgaagaaatgaaatacctaaagtacccttaatgttaaattaaaa 368  Q
    ||||| ||||| || | |||||||||||||| ||||||||||| ||||||||||    
T  26521847 aaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattaaaa 26521794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 3917796 - 3917847
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||||| || | | ||||||||||||||    
T  3917796 gggttaataggcttttac-cccctgccatttgggcgacatttggtttaccccc 3917847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 3923662 - 3923610
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| ||||| |||||| || | | ||||||||||||||    
T  3923662 gggttaataggcttttacccccctaccatttgggcgacatttggtttaccccc 3923610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 38973753 - 38973804
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||| |||||| |||||||||||| ||||| ||||||| |||||||    
T  38973753 gggttaataggtttttac-cccctgccatttgggggttttttggtataccccc 38973804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 39004851 - 39004902
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||| |||||| |||||||||||| ||||| ||||||| |||||||    
T  39004851 gggttaataggtttttac-cccctgccatttgggggttttttggtataccccc 39004902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 11850695 - 11850608
Alignment:
Q  1 taatatgaattttactttcctatgtttcagggcattgcttaggatgtgttaccatgtgatatcaatttaatacatgcccctcaaactat 89  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||    
T  11850695 taatatgaattttactttcctatgtttcagggcattgcttcggatgt-ttactatgtgatatcaatttaatacatgcccctcaaactat 11850608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 314 - 396
Target Start/End: Original strand, 47862550 - 47862633
Alignment:
Q  314 aaaaataatgttgaagaaatgaaatacctaaagtacccttaatgttaaatt-aaaatccaaattaattttttcttcttcttctc 396  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||    
T  47862550 aaaaataatgttgaagatatgaaatacctaaagtacccttaatgttaaattaaaaatccaaattaattttctctttttcttctc 47862633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 88 - 250
Target Start/End: Original strand, 47861931 - 47862095
Alignment:
Q  88 atgggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc-tatg-gnnnnnnnncttggagattcccc-ttgtcattagaagat 184  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| || | |        ||||||||| |||| ||| |||||||||||    
T  47861931 atggattaataggcttttac-cccctgccatttgggggtcttttggtttacccccctacgagaaaaaaaacttggagatccccccttgccattagaagat 47862029  T
Q  185 tctttgatttacacccccatgccatctgattggattaatatgatgatttgacatgctgatgtgtta 250  Q
    |||||| |||||||| |||  |||||||||||||||||| || ||||||| || ||||||||||||    
T  47862030 tctttggtttacacctccaaaccatctgattggattaatgtggtgatttggcacgctgatgtgtta 47862095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 20673565 - 20673622
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctatgg 147  Q
    |||||||||||||||||| |||||||||||| || |||||||||||||||||||||||    
T  20673565 gggttaataggcttttacccccctgccatttgggtgtcttttggtttaccccctatgg 20673622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 23506438 - 23506385
Alignment:
Q  89 tgggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  23506438 tgggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 23506385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 1997112 - 1997060
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  1997112 gggttaataggcttttacccccctgccatttaggggtcttttggtataccccc 1997060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 16314255 - 16314203
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  16314255 gggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 16314203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 5169312 - 5169365
Alignment:
Q  89 tgggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||||||||||| |||||||||||| || ||||||||||||||||||    
T  5169312 tgggttaataggcttttacccccctgccatttgggcgtcttttggtttaccccc 5169365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 17288630 - 17288683
Alignment:
Q  89 tgggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||||||||||    
T  17288630 tgggttaataggcttttacccccctgccatttgggggacttttggtttaccccc 17288683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 23504895 - 23504947
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||||||||||    
T  23504895 gggttaataggcttttacccccctgccatttgggggtctttttgtttaccccc 23504947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 43742076 - 43742021
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctat 145  Q
    |||||||||| ||||||| ||||||| |||| ||||||||||||||||||||||||    
T  43742076 gggttaatagacttttacacccctgctatttgggggtcttttggtttaccccctat 43742021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 39661371 - 39661319
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||| |||||  |||||||||||| |||||||||||||||||||||    
T  39661371 gggttaataggtttttaaccccctgccatttgggggtcttttggtttaccccc 39661319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 56083355 - 56083405
Alignment:
Q  91 ggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  56083355 ggttaataggcttttac-cccctgccatttgggggtcttttggtataccccc 56083405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 6657482 - 6657532
Alignment:
Q  91 ggttaataggcttttactcccctgccatttaggggtcttttggtttacccc 141  Q
    ||||||||||||||||||||||||||||||  |||| ||||| ||||||||    
T  6657482 ggttaataggcttttactcccctgccatttgtgggtgttttgctttacccc 6657532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 12861412 - 12861465
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttacccccta 144  Q
    |||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||    
T  12861412 gggttaataggcttttac-cccctgctatttgggggtgttttggtttacccccta 12861465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 2753120 - 2753075
Alignment:
Q  89 tgggttaataggcttttactcccctgccatttaggggtcttttggt 134  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||    
T  2753120 tgggttaataggcttttacccccctgccatttgggggacttttggt 2753075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 5170440 - 5170387
Alignment:
Q  89 tgggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||||||||||| |||||||||||| || || ||||||| |||||||    
T  5170440 tgggttaataggcttttacccccctgccattttggagttttttggtataccccc 5170387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 1995868 - 1995920
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||||||| || |||||||||| | ||||||||||||| |||||||    
T  1995868 gggttaataggctttcacccccctgccatatgggggtcttttggtataccccc 1995920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 12862768 - 12862716
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||| ||||| ||||||||||||  |||| |||||||||||||||    
T  12862768 gggttaataggcgtttacccccctgccatttgagggtattttggtttaccccc 12862716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 16312647 - 16312699
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||| || |||| |||||||||||| ||||| |||||||||||||||    
T  16312647 gggttaatagcctcttacccccctgccatttgggggttttttggtttaccccc 16312699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 17288810 - 17288766
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggt 134  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||    
T  17288810 gggttaataggcttttacccccctgccatttgggggacttttggt 17288766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 24686573 - 24686525
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttac 138  Q
    |||||||||||||||||| ||||| ||||||||||  ||||||||||||    
T  24686573 gggttaataggcttttacccccctaccatttagggaacttttggtttac 24686525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 6872659 - 6872604
Alignment:
Q  87 tatgggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||||||  ||||| |||||||||||| |||  ||||||||||||||||    
T  6872659 tatgggttaataggggtttacccccctgccatttggggtacttttggtttaccccc 6872604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 20674866 - 20674816
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccc 140  Q
    |||||||||||||||||| |||||||||||| || |  |||||||||||||    
T  20674866 gggttaataggcttttacccccctgccatttgggagatttttggtttaccc 20674816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 24127638 - 24127586
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccct 143  Q
    ||||||||| |||||||| ||||||||||||| |||  ||||||||||||||||    
T  24127638 gggttaataagcttttac-cccctgccatttaagggatttttggtttaccccct 24127586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 39660389 - 39660425
Alignment:
Q  109 cccctgccatttaggggtcttttggtttaccccctatg 146  Q
    |||||||||||| |||||||||||||||||||||||||    
T  39660389 cccctgccattt-ggggtcttttggtttaccccctatg 39660425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 47863668 - 47863599
Alignment:
Q  156 cttggagattcccctt-gtcattagaagattctttgatttac-acccccatgccatctgattggattaat 223  Q
    |||||||||||||| | ||||||||||||||||||||||| | |||| || || |||||| |||||||||    
T  47863668 cttggagattccccctcgtcattagaagattctttgattttcaaccctcaggcaatctgactggattaat 47863599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 2751518 - 2751570
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||| |||||||  |||||||||||| |||| |||||||| |||||||    
T  2751518 gggttaataagcttttatccccctgccatttgggggacttttggtataccccc 2751570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 6866693 - 6866745
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||  ||||| |||||||||||| |||  ||||||||||||||||    
T  6866693 gggttaataggggtttacccccctgccatttggggtacttttggtttaccccc 6866745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 24685024 - 24685076
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||| | || || ||||||| |||||||    
T  24685024 gggttaataggcttttacccccctgccatatgggcgtattttggtataccccc 24685076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 44353876 - 44353928
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||| || ||||||| |||||||||||| |||| |||||||| |||||||    
T  44353876 gggttaacagacttttacccccctgccatttgggggacttttggtataccccc 44353928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 52963824 - 52963860
Alignment:
Q  332 atgaaatacctaaagtacccttaatgttaaattaaaa 368  Q
    |||||||||||||| |||||||||||| |||||||||    
T  52963824 atgaaatacctaaaatacccttaatgtcaaattaaaa 52963860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 24302936 - 24303094
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctatggnnnnnnnncttggagattcccc-ttgtcattagaagattctt 188  Q
    ||||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||         |||||||||||||| |||  ||||||||||||||    
T  24302936 gggttaataggattttac-cccctgccattt-ggggtcttttggtttacccc-tatgaaaaaaaaacttggagattcccccttgcaattagaagattctt 24303032  T
Q  189 tgatttacacccccatgccatctgattggattaatatgatgatttgacatgctgatgtgtta 250  Q
    |||||||||||| || ||||||||| ||||||||| |||||||||| || ||||||||||||    
T  24303033 tgatttacaccctcaagccatctgaatggattaatgtgatgatttggcacgctgatgtgtta 24303094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 314 - 396
Target Start/End: Original strand, 24303156 - 24303239
Alignment:
Q  314 aaaaataatgttgaagaaatgaaatacctaaagtacccttaatgttaaattaaaa-tccaaattaattttttcttcttcttctc 396  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||||||||||||| |||||||||||||| |||||||||||||    
T  24303156 aaaaataatgttgaagatatgaaatacctaaagtaccctttctgttaaattaaaattccaaattaattttctcttcttcttctc 24303239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 9011035 - 9010949
Alignment:
Q  164 ttccccttgtcattagaagattctttgatttacacccccatgccatctgattggattaatatgatgatttgacatgctgatgtgtta 250  Q
    ||||||||| ||||||||||||||||| ||||||||||||  |||||||| ||||||||| ||||||| || || ||||||||||||    
T  9011035 ttccccttgccattagaagattctttggtttacacccccaaaccatctgactggattaatgtgatgatgtggcacgctgatgtgtta 9010949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 17242157 - 17241995
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc-tatggnnnnnnnncttggagattcccc-ttgtcattagaagattct 187  Q
    |||||||||||||||||| |||||||||||| ||||  ||||||| ||||||| | |          |||| ||||||||| ||| ||||||||||||||    
T  17242157 gggttaataggcttttacccccctgccatttgggggctttttggtatacccccctgtcaaaaaaaaacttgtagattcccccttgccattagaagattct 17242058  T
Q  188 ttgatttacacccccatgccatctgattggattaatatgatgatttgacatgctgatgtgtta 250  Q
    ||| ||||||||||||  |||||||| | ||||||| ||||||| || || ||||||||||||    
T  17242057 ttggtttacacccccaaaccatctgactagattaatgtgatgatgtggcacgctgatgtgtta 17241995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 21747943 - 21747995
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  21747943 gggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 21747995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 42097325 - 42097378
Alignment:
Q  89 tgggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||| |||||| |||||||||||| |||||||||||||||||||||    
T  42097325 tgggttaataggtttttacccccctgccatttgggggtcttttggtttaccccc 42097378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 42098784 - 42098727
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggttta-ccccctatg 146  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  42098784 gggttaataggcttttacccccctgccatttgggggtcttttggtttatccccctatg 42098727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 43402266 - 43402318
Alignment:
Q  93 ttaataggcttttactcccctgccatttaggggtcttttggtttaccccctatg 146  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  43402266 ttaataggcttttac-cccctgccatttgggggtcttttggtttaccccctatg 43402318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 13971056 - 13971004
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  13971056 gggttaataggtttttactcccctgccatttgggagtcttttggtttaccccc 13971004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 17240717 - 17240769
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  17240717 gggttaataggcttttacccccctgccatttgggggtcttttggtataccccc 17240769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 9008759 - 9008813
Alignment:
Q  88 atgggttaataggcttttactcccctgccatttaggggtcttttggtttaccccct 143  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||    
T  9008759 atgggttaataggcttttac-cccctgccatttgggggtcttttggtataccccct 9008813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 43403351 - 43403299
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||  |||||| ||||| |||||||||||||||||||||    
T  43403351 gggttaataggcttttatccccctgtcatttgggggtcttttggtttaccccc 43403299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 49383023 - 49383074
Alignment:
Q  91 ggttaataggcttttactcccctgccatttaggggtcttttggtttaccccct 143  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  49383023 ggttaatagacttttac-cccctgccatttaggggacttttggtttaccccct 49383074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 35713749 - 35713697
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||| ||||||||| |||||||||| | ||||||||||||| |||||||    
T  35713749 gggttaatgggcttttacccccctgccatatgggggtcttttggtataccccc 35713697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 48030197 - 48030154
Alignment:
Q  181 agattctttgatttacacccccatgccatctgattggattaata 224  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||    
T  48030197 agattctttggtttacacccccaggccatctgattggataaata 48030154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 48030290 - 48030240
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttacccc 141  Q
    |||||||||||||||||| |||||||||||| ||||||||||| | ||||||    
T  48030290 gggttaataggcttttac-cccctgccatttgggggtcttttgatatacccc 48030240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 35712663 - 35712716
Alignment:
Q  315 aaaataatgttgaagaaatgaaatacctaaagtacccttaatgttaaattaaaa 368  Q
    ||||| ||||| || | |||||||||||||| ||||||||||| ||||||||||    
T  35712663 aaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattaaaa 35712716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 24304288 - 24304228
Alignment:
Q  164 ttccccttgtcattagaagattctttgatttac-acccccatgccatctgattggattaat 223  Q
    ||||||| | ||||||||||||||||||||| | |||| || || ||||||||||||||||    
T  24304288 ttcccctcgccattagaagattctttgattttcaaccctcaggcaatctgattggattaat 24304228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 51676389 - 51676338
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||| ||||||| ||||||| |||| ||||||||||||| |||||||    
T  51676389 gggttaatagacttttac-cccctgctatttgggggtcttttggtataccccc 51676338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 314 - 396
Target Start/End: Original strand, 11150496 - 11150579
Alignment:
Q  314 aaaaataatgttgaagaaatgaaatacctaaagtacccttaatgttaaatt-aaaatccaaattaattttttcttcttcttctc 396  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  11150496 aaaaataatgtttaagatatgaaatacctaaagtacccttaatgttaaattaaaaatccaaattaattttctcttcttcttctc 11150579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 11150350 - 11150434
Alignment:
Q  166 ccccttgtcattagaagattctttgatttacacccccatgccatctgattggattaatatgatgatttgacatgctgatgtgtta 250  Q
    ||||||| ||||||||||||| ||| |||||||||||| | ||||||||||||||||| |||||||||| || ||||||||||||    
T  11150350 ccccttgccattagaagattccttggtttacacccccaagtcatctgattggattaatgtgatgatttggcacgctgatgtgtta 11150434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 36438827 - 36438775
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  36438827 gggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 36438775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 48537852 - 48537906
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctatg 146  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  48537852 gggttaataggcttttac--ccctgccatttgggggtcttttggtttaccccctatg 48537906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 15439733 - 15439681
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  15439733 gggttaataggcttttacccccccgccatttgggggtcttttggtttaccccc 15439681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 34799865 - 34799917
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  34799865 gggttaatagacttttacccccctgccatttgggggtcttttggtttaccccc 34799917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 42278509 - 42278457
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  42278509 gggttaataggcttttacccccctaccatttgggggtcttttggtttaccccc 42278457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 36437214 - 36437266
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||| ||||||| |||||||||||| ||||| |||||||||||||||    
T  36437214 gggttaatagccttttacccccctgccatttgggggttttttggtttaccccc 36437266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 37086795 - 37086743
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| ||||||||||||  | ||||||||||||||||||    
T  37086795 gggttaataggcttttacccccctgccatttgagcgtcttttggtttaccccc 37086743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 11151646 - 11151596
Alignment:
Q  91 ggttaataggcttttactcccctgccatttaggggtcttttggtttacccc 141  Q
    ||||||||||||||||| ||||| |||||| |||| |||||||||||||||    
T  11151646 ggttaataggcttttacccccctaccatttgggggacttttggtttacccc 11151596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 15438470 - 15438522
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| ||||||||||||  |||| ||||||| |||||||    
T  15438470 gggttaataggcttttacccccctgccatttgagggttttttggtataccccc 15438522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 34801433 - 34801393
Alignment:
Q  102 ttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  34801433 ttttacccccctgccatttgggggtcttttggtttaccccc 34801393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 37085413 - 37085465
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||| |||||  |||||||||||| || ||||||||||||||||||    
T  37085413 gggttaataggtttttatccccctgccatttgggcgtcttttggtttaccccc 37085465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 34825793 - 34825846
Alignment:
Q  315 aaaataatgttgaagaaatgaaatacctaaagtacccttaatgttaaattaaaa 368  Q
    ||||| ||||| || | |||||||||||||| ||||||||||| ||||||||||    
T  34825793 aaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattaaaa 34825846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 46652775 - 46652722
Alignment:
Q  315 aaaataatgttgaagaaatgaaatacctaaagtacccttaatgttaaattaaaa 368  Q
    ||||| ||||| || | |||||||||||||| ||||||||||| ||||||||||    
T  46652775 aaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattaaaa 46652722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 13866007 - 13865958
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttacccc 141  Q
    ||||||||||||||||||  |||| |||||| ||||||||||||| ||||||    
T  13866007 gggttaataggcttttac--ccctaccatttgggggtcttttggtatacccc 13865958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 14997027 - 14997080
Alignment:
Q  91 ggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctatg 146  Q
    |||||||||||||||||  ||||||||||| |  ||||||||||||| ||||||||    
T  14997027 ggttaataggcttttac--ccctgccatttggaagtcttttggtttatcccctatg 14997080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 30034614 - 30034666
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||| |||||| |||||||||||| || | | ||||||||||||||    
T  30034614 gggttaatagggttttacccccctgccatttgggcgacatttggtttaccccc 30034666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 37085647 - 37085683
Alignment:
Q  332 atgaaatacctaaagtacccttaatgttaaattaaaa 368  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  37085647 atgaaatacctaaaatacccttaatgataaattaaaa 37085683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 39606691 - 39606639
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||| |||||||||| |||||||||||| |  ||||||||||||| ||||    
T  39606691 gggttaaaaggcttttacccccctgccatttggaagtcttttggtttatcccc 39606639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 48165506 - 48165557
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||| |||||||| || |||||||| | |||||||||||||||||||    
T  48165506 gggttaatagacttttacttcc-tgccatttggaggtcttttggtttaccccc 48165557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 29072475 - 29072560
Alignment:
Q  1 taatatgaattttactttcctatgtttcagggcattgcttaggatgtgttaccatgtgatatcaatttaatacatgcccctcaaactat 89  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| | || |||||  |||||||||||||||||||||||||||||    
T  29072475 taatatgaattttactttcctatgtttcagggcattgcttcggatgt-tgactatgtg--atcaatttaatacatgcccctcaaactat 29072560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 5737177 - 5737339
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc-tatggnnnnnnnncttggagattcccc-ttgtcattagaagattct 187  Q
    |||||||||||||||||| |||||||||||| ||||  ||||||| ||||||| | |          |||| ||||||||| ||| ||||||||||||||    
T  5737177 gggttaataggcttttacccccctgccatttgggggctttttggtatacccccctgtcaaaaaaaaacttgtagattcccccttgccattagaagattct 5737276  T
Q  188 ttgatttacacccccatgccatctgattggattaatatgatgatttgacatgctgatgtgtta 250  Q
    ||| ||||||||||||  |||||||| | ||||||| ||||||| || || ||||||||||||    
T  5737277 ttggtttacacccccaaaccatctgactagattaatgtgatgatgtggcacgctgatgtgtta 5737339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 12629483 - 12629431
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  12629483 gggttaataggcttttacccccctgccatttacgggtcttttggtttaccccc 12629431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 21261980 - 21262032
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  21261980 gggttaataggcttttacccccctgccatttaggggtcttttggtataccccc 21262032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 5769362 - 5769308
Alignment:
Q  88 atgggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  5769362 atgggttaataggcttttacccccctgccatttgggggtcttttggtataccccc 5769308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 12628033 - 12628085
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  12628033 gggttaataggcttttacccccctgccatttgcgggtcttttggtttaccccc 12628085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 47578640 - 47578587
Alignment:
Q  89 tgggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||||||||||| |||||||||||| || | |||||||| |||||||    
T  47578640 tgggttaataggcttttacccccctgccatttgggagacttttggtataccccc 47578587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3618321 - 3618408
Alignment:
Q  1 taatatgaattttactttcctatgtttcagggcattgcttaggatgtgttaccatgtgatatcaatttaatacatgcccctcaaactat 89  Q
    ||||| ||||||||||| || ||||||||||||||||| |  ||||| | ||||| |||||||||||||||| |   ||||||||||||    
T  3618321 taataggaattttacttgccaatgtttcagggcattgcctctgatgt-tgaccatttgatatcaatttaatatagatccctcaaactat 3618408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 19628235 - 19628184
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||| |||||| |||||||||||| || ||||||||||||||||||    
T  19628235 gggttaataggtttttac-cccctgccatttgggagtcttttggtttaccccc 19628184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 21263373 - 21263321
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||||||| || |||||||||| | ||||||||||||| |||||||    
T  21263373 gggttaataggctttcacccccctgccatatgggggtcttttggtataccccc 21263321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 7848006 - 7848061
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctat 145  Q
    |||||||| ||||||||| |||||||||| |  |||||||||||| ||||||||||    
T  7848006 gggttaatgggcttttacccccctgccatatgagggtcttttggtataccccctat 7848061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 23456733 - 23456680
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccct 143  Q
    ||||||||||| ||||||||||||||||| |  | |||||||||| ||||||||    
T  23456733 gggttaataggtttttactcccctgccatatgagcgtcttttggtataccccct 23456680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 23525581 - 23525633
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| || ||||||||| ||||  ||||||| |||||||    
T  23525581 gggttaataggcttttaccccgctgccatttgggggatttttggtataccccc 23525633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 21383874 - 21383822
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  21383874 gggttaataggcttttacccccctgccatttaggggtcttttggtataccccc 21383822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 25482148 - 25482200
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  25482148 gggttaataggcttttacccccctgccatttaggagtcttttggtttaccccc 25482200  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 32146146 - 32146094
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||  |||||||||||| |||||||||||||||||||||    
T  32146146 gggttaataggcttttatccccctgccatttgggggtcttttggtttaccccc 32146094  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 12603937 - 12603988
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||||||||    
T  12603937 gggttaataggcttttac-cccctgccatttgggagtcttttggtttaccccc 12603988  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 12605299 - 12605244
Alignment:
Q  89 tgggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctat 145  Q
    ||||||||||| |||||| |||||||||||||| | |||||||||||||||||||||    
T  12605299 tgggttaatagactttta-tcccctgccatttatgagtcttttggtttaccccctat 12605244  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 5858898 - 5858948
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccc 140  Q
    |||||||||| ||||||| |||||||||||| ||||| |||||||||||||    
T  5858898 gggttaatagacttttacccccctgccatttgggggttttttggtttaccc 5858948  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 26545920 - 26545871
Alignment:
Q  92 gttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  26545920 gttaataggcttttac-cccctgccatttgagggtcttttggtttaccccc 26545871  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 9305621 - 9305670
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttacc 139  Q
    |||||||||||||||||| ||||||| ||||||| | |||||||||||||    
T  9305621 gggttaataggcttttacccccctgctatttaggagacttttggtttacc 9305670  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 21382482 - 21382534
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||||||| || |||||||||| | ||||||||||||| |||||||    
T  21382482 gggttaataggctttcacccccctgccatatgggggtcttttggtataccccc 21382534  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 25483453 - 25483402
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||||| || ||||||||| ||||||||    
T  25483453 gggttaataggcttttac-cccctgccatttgggagtcttttggattaccccc 25483402  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 35223132 - 35223184
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||| ||||||| |||||||||||| | ||| |||||||||||||||    
T  35223132 gggttaatagacttttacccccctgccatttggcggtgttttggtttaccccc 35223184  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 29043674 - 29043618
Alignment:
Q  88 atgggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctat 145  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||    
T  29043674 atgggttaataggctttta-tcccgtgccatttaggggtcttttggtgtaccccctat 29043618  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 25648620 - 25648667
Alignment:
Q  89 tgggttaataggcttttactcccctgccatttaggggtcttttggttta 137  Q
    |||||||||||||||||||| |||||||||||||| | |||||||||||    
T  25648620 tgggttaataggcttttact-ccctgccatttaggagacttttggttta 25648667  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 29042336 - 29042390
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctat 145  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||| |||| |||||    
T  29042336 gggttaataggcttttac-cccctgctatttgggggtcttttggtatacctcctat 29042390  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 395
Target Start/End: Original strand, 18615749 - 18615830
Alignment:
Q  315 aaaataatgttgaagaaatgaaatacctaaagtacccttaatgttaaatt-aaaatccaaattaattttttcttcttcttct 395  Q
    |||||||| || ||||  ||||||||||||| ||||| |||||  ||||| ||||||| |||| ||||| ||||||||||||    
T  18615749 aaaataatattaaagatgtgaaatacctaaaatacccctaatgccaaattaaaaatcccaatttattttctcttcttcttct 18615830  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 395
Target Start/End: Complemental strand, 29220759 - 29220678
Alignment:
Q  315 aaaataatgttgaagaaatgaaatacctaaagtacccttaatgttaaatt-aaaatccaaattaattttttcttcttcttct 395  Q
    |||||||| || ||||  ||||||||||||| ||||| |||||  ||||| ||||||| |||| ||||| ||||||||||||    
T  29220759 aaaataatattaaagatgtgaaatacctaaaatacccctaatgccaaattaaaaatcccaatttattttctcttcttcttct 29220678  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 395
Target Start/End: Complemental strand, 29334058 - 29333977
Alignment:
Q  315 aaaataatgttgaagaaatgaaatacctaaagtacccttaatgttaaatt-aaaatccaaattaattttttcttcttcttct 395  Q
    |||||||| || ||||  ||||||||||||| ||||| |||||  ||||| ||||||| |||| ||||| ||||||||||||    
T  29334058 aaaataatattaaagatgtgaaatacctaaaatacccctaatgccaaattaaaaatcccaatttattttctcttcttcttct 29333977  T

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Target: scaffold0071 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 22458 - 22510
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  22458 gggttaataggcttttacccccccgccatttgggggtcttttggtttaccccc 22510  T

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Target: scaffold0071; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 23721 - 23669
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| ||||||||||||  |||| ||||||| |||||||    
T  23721 gggttaataggcttttacccccctgccatttgagggttttttggtataccccc 23669  T

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Target: scaffold0049 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 385 - 435
Alignment:
Q  89 tgggttaataggcttttactcccctgccatttaggggtcttttggtttacc 139  Q
    ||||||||||||||||||| |||||||||||| |||| |||||||||||||    
T  385 tgggttaataggcttttacccccctgccatttgggggacttttggtttacc 435  T

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Target: scaffold0049; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 3976 - 3924
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccct 143  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||||| |||||    
T  3976 gggttaataggcttttac-cccctgccatttgggggacttttggtttatcccct 3924  T

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Target: scaffold0408 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 10087 - 10136
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttacccc 141  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  10087 gggttaataggcttttac--ccctgccatttgggggtcttttggtttacccc 10136  T

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Target: scaffold0484 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 11536 - 11590
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctat 145  Q
    |||||||||||||||||| |||||||||||| || ||||||||| |||||||||||    
T  11536 gggttaataggcttttac-cccctgccatttgggagtcttttggattaccccctat 11590  T

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Target: scaffold0484; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 12851 - 12797
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccctat 145  Q
    |||||||||||||||||| | || |||||||||| |||||||||||||||||||||    
T  12851 gggttaataggcttttaccctcc-gccatttaggagtcttttggtttaccccctat 12797  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 11308 - 11256
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||| |||||| |||||||||| | |||||||||||||||| ||||    
T  11308 gggttaataggtttttacccccctgccatatgggggtcttttggtttatcccc 11256  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 12316348 - 12316399
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||| |||||||    
T  12316348 gggttaataggcttttact-ccctgccatttggaggtcttttggtataccccc 12316399  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 27490099 - 27490152
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccct 143  Q
    ||||||||||||||||||  ||||| ||| | ||||||||||||| ||||||||    
T  27490099 gggttaataggcttttacctccctgtcatatgggggtcttttggtataccccct 27490152  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 27491098 - 27491062
Alignment:
Q  332 atgaaatacctaaagtacccttaatgttaaattaaaa 368  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  27491098 atgaaatacctaaaatacccttaatgataaattaaaa 27491062  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 29875947 - 29875998
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccc 142  Q
    |||||||||||||||||| |||||||||||| || | | ||||||||||||||    
T  29875947 gggttaataggcttttac-cccctgccatttgggcgacatttggtttaccccc 29875998  T

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Target: scaffold0471 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 12244 - 12192
Alignment:
Q  90 gggttaataggcttttactcccctgccatttaggggtcttttggtttaccccct 143  Q
    ||||||||| |||||||| ||||||||||||| |||  ||||||||||||||||    
T  12244 gggttaataagcttttac-cccctgccatttaagggatttttggtttaccccct 12192  T

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