View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_low_10 (Length: 358)
Name: NF6188_low_10
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 25 - 343
Target Start/End: Original strand, 32907033 - 32907352
Alignment:
| Q |
25 |
cagaaaaagataaatagcttctgtaaggatcggtaaatttaacaaatttctaaaatatcaatttagcccatttggtcannnnnnnncaaatttttagaga |
124 |
Q |
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| T |
32907033 |
cagaaaaagataaatagcttctgtaaggatcggtaaatttaacaaatttctaaaatatcaatttagcccatttggtcatttttttttcaaattttagaga |
32907132 |
T |
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| Q |
125 |
ttttaggtttactctgatgcaataaaaaactatagaagtcaatatgatattcttgcataggataaacctaacatctttaaaagtatagtgctagatttga |
224 |
Q |
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| T |
32907133 |
ttttatgtttactctgatgcaataaaaaactatagaagtcaatatgatattcttgcataggataaacctaacatctttaaaagtatagtgctagatttga |
32907232 |
T |
|
| Q |
225 |
aaggg-nnnnnnnttattgttgtttattcaatttaatggacttaattattgctatttttgaaattttaggcattaaattaacacccttacaaattgaagt |
323 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32907233 |
aagggaaaaaaaattattgttgtttattcaatttaatggacttaattattgctatttttgaaattttaggcattaaattaacacccttacaaattgaagt |
32907332 |
T |
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| Q |
324 |
gtgtttgtatatgtatattt |
343 |
Q |
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|||| ||||||||||||||| |
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| T |
32907333 |
gtgtgtgtatatgtatattt |
32907352 |
T |
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