View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_low_11 (Length: 344)
Name: NF6188_low_11
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 1355680 - 1355362
Alignment:
| Q |
8 |
tgagaagaaggaaactaaaataaaaccttttattgcaaaacaaaaatcacaataaatatattgattatgagaagaagggaaacacatgatacaaaattac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355680 |
tgagaagaaggaaactaaaataaaaccttttattgcaaaacaaaaatcacaataaatatattgattatgagaagaagggaaacacatgatacaaaattac |
1355581 |
T |
|
| Q |
108 |
tagtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355580 |
tagtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaa |
1355481 |
T |
|
| Q |
208 |
ccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagaccc |
307 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355480 |
ccttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagaccc |
1355381 |
T |
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| Q |
308 |
atcttcctcactccttggt |
326 |
Q |
| |
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||||||||||||||||||| |
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| T |
1355380 |
atcttcctcactccttggt |
1355362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 109 - 326
Target Start/End: Complemental strand, 1362465 - 1362248
Alignment:
| Q |
109 |
agtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaac |
208 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1362465 |
agtctacctagttgttggaattggaaggattcctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaac |
1362366 |
T |
|
| Q |
209 |
cttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagaccca |
308 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1362365 |
tttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagaccca |
1362266 |
T |
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| Q |
309 |
tcttcctcactccttggt |
326 |
Q |
| |
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|||||||||||||||||| |
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| T |
1362265 |
tcttcctcactccttggt |
1362248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 177 - 326
Target Start/End: Complemental strand, 20493182 - 20493033
Alignment:
| Q |
177 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
276 |
Q |
| |
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|||| |||||||| ||||||||||| ||||| ||| |||| ||||| ||||| || || | ||||||||||||||||||| |||||||||||||||| |
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| T |
20493182 |
tattcattgtgaagatcttttgaaccgaaaatctttcccatatctttggcattttttctatagatacttccttcctcatccactattgccaacctcaatg |
20493083 |
T |
|
| Q |
277 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggt |
326 |
Q |
| |
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| || | ||||||||||||||| |||||||||| |||| |||||||| |
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| T |
20493082 |
ttttggctatagagtccctagtaaaggacccatcttgctcattccttggt |
20493033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 128 - 326
Target Start/End: Complemental strand, 11532409 - 11532211
Alignment:
| Q |
128 |
attggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgca |
227 |
Q |
| |
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||||||| |||| |||||||| | ||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||||| |||| ||||| ||| |
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| T |
11532409 |
attggaatgaactctatacttttgaagagcaacaataaaatcttcaatgtattgattgtgaagatcttttgaactgaaaacctttcccatatctttggca |
11532310 |
T |
|
| Q |
228 |
ttgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggt |
326 |
Q |
| |
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||||| ||| | |||||||||||||||||| ||| |||||||||||| | || || |||||||||||||| ||||| |||| ||||||||||||| |
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| T |
11532309 |
ttgtttctgtacgtacttccttcctcatccattattaccaacctcaatgttttggctactgagtccctagtaaaggacccgtctttctcactccttggt |
11532211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 136 - 325
Target Start/End: Complemental strand, 12847066 - 12846877
Alignment:
| Q |
136 |
gaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcct |
235 |
Q |
| |
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||||||||||||| | |||||||||||| || || ||||| |||| ||||||| |||||||||||||||| ||| |||| |||||||||||||||||| |
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| T |
12847066 |
gaaccctatacttttgaagagcagcaatgaaatcttcaatgtattttttgtgaagttcttttgaactgaaaatcttgcccatctcttttgcattgttcct |
12846967 |
T |
|
| Q |
236 |
gaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttgg |
325 |
Q |
| |
|
| || || ||||||| |||||| ||||| |||||||||| | || ||| ||||||||||||| |||||||| |||||||| ||||| |
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| T |
12846966 |
gtaaataattccttcggcatccattattgctaacctcaatgttagggctacaaagtccctagtaaaggacccatcctcctcacttcttgg |
12846877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 326
Target Start/End: Complemental strand, 14589470 - 14589321
Alignment:
| Q |
177 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
276 |
Q |
| |
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|||| |||||||| |||||||||||| | |||||| |||| ||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
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| T |
14589470 |
tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14589371 |
T |
|
| Q |
277 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggt |
326 |
Q |
| |
|
| ||| ||| |||||||| ||| | ||||||| ||||||||||||| |
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| T |
14589370 |
ttttagcaacacagtccctattaatggccccatctggctcactccttggt |
14589321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 326
Target Start/End: Complemental strand, 14623128 - 14622979
Alignment:
| Q |
177 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
276 |
Q |
| |
|
|||| |||||||| |||||||||||| | |||||| |||| ||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
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| T |
14623128 |
tattcattgtgaagatcttttgaactcacaacctttcccatgtctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14623029 |
T |
|
| Q |
277 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggt |
326 |
Q |
| |
|
| ||| ||| |||||||| ||| | ||||||| ||||||||||||| |
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| T |
14623028 |
ttttagcaacacagtccctattaatggccccatctggctcactccttggt |
14622979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 136 - 326
Target Start/End: Complemental strand, 29955088 - 29954898
Alignment:
| Q |
136 |
gaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcct |
235 |
Q |
| |
|
|||| |||||||| | |||||||||||| | || | ||| |||| |||||||| ||||||||||||||||||||| ||| ||||| ||||| |||| |
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|
| T |
29955088 |
gaactctatacttttgaagagcagcaatgacatctttaatgtattcattgtgaagatcttttgaactgaaaaccttttccatatctttggcattattcc- |
29954990 |
T |
|
| Q |
236 |
gaaac-tacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggt |
326 |
Q |
| |
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|| || ||||||||||||||||||| |||||||||||||||| || || | |||||||||||||| |||||||||| ||||||||||||| |
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| T |
29954989 |
gatacatacttccttcctcatccactattgccaacctcaatgtttgggctatcgagtccctagtaaaggacccatcttgctcactccttggt |
29954898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 131 - 326
Target Start/End: Original strand, 51369360 - 51369555
Alignment:
| Q |
131 |
ggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattg |
230 |
Q |
| |
|
|||| |||| |||| ||| | ||||||||| || || || | ||| ||||||||||||| ||||||||||||||||| || |||| ||||| ||||| |
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| T |
51369360 |
ggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaatttttcccatatctttagcattt |
51369459 |
T |
|
| Q |
231 |
ttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggt |
326 |
Q |
| |
|
|||||| | | || |||||||||||||| ||| |||||||||||| | || ||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
51369460 |
ttcctgcacgtgctaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatcttgctcactccttggt |
51369555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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