View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6188_low_14 (Length: 311)
Name: NF6188_low_14
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 302
Target Start/End: Complemental strand, 1815032 - 1814731
Alignment:
| Q |
3 |
cgtccaaacagccgcgaactgacttccatgcgaccttcccttcgcgcagtcatctgatcagccactcaccgtctcctttgttcctgcactgatctagttg |
102 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1815032 |
cgtccaaacagccgcgaaccgacttccatgcgaccttcccttcgtgcagtcatctgatcagccattcaccgtctcctttgttcctgcactgatctagttg |
1814933 |
T |
|
| Q |
103 |
aagacatgacccacacaaacagaggccgcctaaaggcctaactacctagctataagattatgaatatcatagaatcaacgcataatgcaacagttctata |
202 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1814932 |
aagacatgaccgacgcaaacagaggccgcctaaaggcctaactacctagctataagattatgaatatcatagaatcaacacataatgcaacagttctata |
1814833 |
T |
|
| Q |
203 |
tattctatttgaatactctcatcggtctattgatgaaccaaatatagtttagtctatcataaatggaccaaaattattatattagt--agttatatattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1814832 |
tattctatttgaatactctcatcggtctattgatgaaccaaatatagtttagtctatcataaatggaccaaaattattatattagtacagttatatattc |
1814733 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
|
|| |
|
|
| T |
1814732 |
tt |
1814731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 248
Target Start/End: Complemental strand, 1830524 - 1830412
Alignment:
| Q |
136 |
aggcctaactacctagctataagattatgaatatcatagaatcaacgcataatgcaacagttctatatattctatttgaatactctcatcggtctattga |
235 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| | | |||||||||| ||||||||||| ||| |||| | |
|
|
| T |
1830524 |
aggcctaactacctagccataagattatgcgtatcatagaatcaacacataatgcaacagttatgtgtattctatttaaatactctcattggtatattaa |
1830425 |
T |
|
| Q |
236 |
tgaaccaaatata |
248 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
1830424 |
tgaacctaatata |
1830412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 1830560 - 1830520
Alignment:
| Q |
89 |
cactgatctagttgaagacatgacccacacaaacagaggcc |
129 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
1830560 |
cactgatctagttgaagacacgacccatgcaaacagaggcc |
1830520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University