View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_low_15 (Length: 311)
Name: NF6188_low_15
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 36448405 - 36448707
Alignment:
| Q |
1 |
gatcgtccttcaatccaacgttggcttgacgaaggtcatcgtacttgtccaattaccaaactaccccttcccgattctcctatcctcatcccgaaccacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36448405 |
gatcgtccttcaatccaacgttggcttgacgaaggtcatcgtacttgtccaattaccaaactaccccttcctgattctcctatcctcatcccgaaccacg |
36448504 |
T |
|
| Q |
101 |
cgcttcgtagtttaatttctagttacacactccttccaccacttcatcaaatcatttcacaacccgaaaccctaatttcaaccctaattttgaattcttc |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36448505 |
cgcttcgtagtttaatctctagttacacactccttccaccacttcatcaaatcatttcacaacccgaaaccctaatttcaaccctaattttgaattcttc |
36448604 |
T |
|
| Q |
201 |
ttcttccgattccaaaattgactcgcttcgtcaacttgctcgtctttctaaacgtgatgccagtttccgtcgccgtcttgttgattccggtgccgtctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36448605 |
ttcttccgattccaaaattgactcgcttcgtcaactcgctcgtctttctaaacgtgatgccagtttccgtcgtcgtcttgttgattccggtgccgtctct |
36448704 |
T |
|
| Q |
301 |
gct |
303 |
Q |
| |
|
||| |
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| T |
36448705 |
gct |
36448707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 11446882 - 11446943
Alignment:
| Q |
238 |
gctcgtctttctaaacgtgatgccagtttccgtcgccgtcttgttgattccggtgccgtctc |
299 |
Q |
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| T |
11446882 |
gctcgtctttctaaacatgatgctaattttcgtcgccgtcttgttgattcaggtgccgtctc |
11446943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 2535366 - 2535305
Alignment:
| Q |
238 |
gctcgtctttctaaacgtgatgccagtttccgtcgccgtcttgttgattccggtgccgtctc |
299 |
Q |
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||||||||||||||||||||||| | ||| ||||| ||||||||||||| ||||||||||| |
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| T |
2535366 |
gctcgtctttctaaacgtgatgctaattttcgtcgttgtcttgttgattcaggtgccgtctc |
2535305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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