View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_low_16 (Length: 310)
Name: NF6188_low_16
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 56378838 - 56378563
Alignment:
| Q |
17 |
cacagattcctcttgcttttgaaatttccatccaactttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcctgaaccttttc |
116 |
Q |
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| T |
56378838 |
cacagattcctcttgcttttgaaatttccatccaactttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcctgaaccttttc |
56378739 |
T |
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| Q |
117 |
ttcatcactacctcctgctgctgctgctgttgat---------gatgcatatgtagtctacctgctgcctcttcttgttcatcagattcagaaggtatgt |
207 |
Q |
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| T |
56378738 |
ttcatcactacctcctgctgctgctgctgttgatgatgatgatgatgcatatgtagtctacctgctgcctcttcttgttcatcagattcagaaggtatgt |
56378639 |
T |
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| Q |
208 |
tgtagttgaatggcatgatgatgtggccatgtccatgaggtggcgctacagctctagaaggaagaatgttgttgtt |
283 |
Q |
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| T |
56378638 |
tgtagttgaatggcatgatgatgtggccatgtccatgaggtggcgctacagctctagaaggaagaatgttgttgtt |
56378563 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 2494351 - 2494418
Alignment:
| Q |
42 |
ttccatccaactttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcctgaa |
109 |
Q |
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| T |
2494351 |
ttccacccaactttctcagcaaatttcagcatcttatccttctgatcttgtgtaaactttgtcctgaa |
2494418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 14021521 - 14021574
Alignment:
| Q |
53 |
tttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcct |
106 |
Q |
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| T |
14021521 |
tttctcagctaactccaacatcttatccttctgttcctgcgtgaattttgtcct |
14021574 |
T |
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