View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_low_18 (Length: 285)
Name: NF6188_low_18
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_18 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 8647135 - 8646851
Alignment:
| Q |
1 |
ttagtgtgttgttatcgaaatgattggatgttagggaataggtgttaactgaccatttgattaattgtgaaggcacatatatatacatatatgttattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8647135 |
ttagtgtgttgttatcgaaatgattggatgttagggaataggtgttaactgaccatttgattaattgtgaaggcacatatatatacatatatgttattgt |
8647036 |
T |
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| Q |
101 |
taattgtttaataattagtgattgtggatcaatgcctaattatagactagtaatcaacattttaaatataaattttacaatctagttaatcactttttga |
200 |
Q |
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| T |
8647035 |
taattgtttaataattagtgattgtggatcaatgcctaattatagactagtaatcaacattttaaatataaattttacaatctagttaatcactttttga |
8646936 |
T |
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| Q |
201 |
atagatacaaacctattgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttctat |
285 |
Q |
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| T |
8646935 |
atagatacaaacctattgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttctat |
8646851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 8611729 - 8611799
Alignment:
| Q |
215 |
attgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttctat |
285 |
Q |
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| T |
8611729 |
attgtggattggagctatcatagtaaacctttgattagcaaaactcattctcatctcatttgtccttctat |
8611799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 8555789 - 8555724
Alignment:
| Q |
217 |
tgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttc |
282 |
Q |
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| T |
8555789 |
tgtggattggagctatcacaataaccctttgattagcaaaactcattctcatctcatttgtccttc |
8555724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 8556933 - 8556999
Alignment:
| Q |
217 |
tgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttct |
283 |
Q |
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| T |
8556933 |
tgtggattggagctatcacaataaatctttgattagcaaaactcattctcatctcatttatccttct |
8556999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 8567318 - 8567250
Alignment:
| Q |
215 |
attgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttct |
283 |
Q |
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| T |
8567318 |
attgtggactgaagctatcacaataaccctttgattaggaaaactcattctcatctcatttgtccttct |
8567250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 37142407 - 37142313
Alignment:
| Q |
31 |
ttagggaataggtgttaactgaccatttgattaattgtgaaggcacatatatatacatatatgttattgttaattgtttaataattagtgattgtg |
126 |
Q |
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| T |
37142407 |
ttagggagtaggtgttaattgacggttt-atcaattgtgatggcacatatatatacatctatgtcattgttaattgtttaataattagtgactgtg |
37142313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 11831180 - 11831281
Alignment:
| Q |
109 |
taataattagtgattgtggatcaatgcctaattatagactagtaatcaacattttaaatataaattttacaatctag-ttaatcactttttgaatagata |
207 |
Q |
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|||||||||||||||||| ||||||| ||| |||| ||||||||||| ||||||||| |||| ||| ||||||||| |||||||| |||||| |||||| |
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| T |
11831180 |
taataattagtgattgtgaatcaatgactatttatcgactagtaatcgacattttaagtatatttttcacaatctagcttaatcacgttttgattagata |
11831279 |
T |
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| Q |
208 |
ca |
209 |
Q |
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|| |
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| T |
11831280 |
ca |
11831281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 12050558 - 12050627
Alignment:
| Q |
87 |
atatatgttattgttaattgtttaataattagtgattgtggatcaatgcctaattatagactagtaatcaa |
157 |
Q |
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| T |
12050558 |
atatatgttattgttaatt-tttaataattactaattgtgaatcaatgcctaattttcgactagtaatcaa |
12050627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 31926033 - 31926097
Alignment:
| Q |
120 |
gattgtggatcaatgcctaattatagactagtaatcaacattttaaatataaattttacaatctag |
185 |
Q |
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| T |
31926033 |
gattgtgaatcaatgcctaattatcgactagtaatcaa-attttaaatatattttttacaatctag |
31926097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 29863160 - 29863241
Alignment:
| Q |
128 |
atcaatgcctaattatagactagtaatcaacattttaaatataaattttacaatctag-ttaatcactttttgaatagataca |
209 |
Q |
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|||| ||||||||||| || | ||||||||||||||||||| | || |||||||||| ||||||||||||||| || ||||| |
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| T |
29863160 |
atcattgcctaattatcaacaactaatcaacattttaaatat-atttctacaatctagcttaatcactttttgattatataca |
29863241 |
T |
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