View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_low_2 (Length: 672)
Name: NF6188_low_2
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 363
Target Start/End: Complemental strand, 16053071 - 16052724
Alignment:
| Q |
15 |
aatctacgccatcttgatatcaagggagacagcctcactaatgttggtttgcttgccattcttgataagtgcccttttcttaaatctcttgacattcgac |
114 |
Q |
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| T |
16053071 |
aatctatgctatcttgatatcaagggagacaacctcactaatgatggtttgctcgccattcttgataaatgcccttttcttgaatctcttgaccttcaag |
16052972 |
T |
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| Q |
115 |
gatgttattctttggaattaagtataagtttgaagaaaaggtgcactgagcagatcaatcatttgcaactgccaaattcttatgactttgatgactatga |
214 |
Q |
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| T |
16052971 |
gatgtcgttatctagaattaagtaaaagtttggagaaaaggtgcattgatccgatcaatcatttgcgactgccaaatttttatgtctttgatgactatga |
16052872 |
T |
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| Q |
215 |
ttactcccctagttatgaatatgactttggcggagactatgatccttggtactactgaatgttgtagtattggtg--atgatgaaaaataaggtttttat |
312 |
Q |
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| T |
16052871 |
ttactcccc---ttgtgaatatgactttggcggagactatgattcttggtactactgaatgttgtagtattggtgatatgatgaaaaataaggtttttat |
16052775 |
T |
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| Q |
313 |
attatacggtggatttcttgtcatgtactccctctgatctcgaatgtaagc |
363 |
Q |
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| T |
16052774 |
attatacggtggatttcttgtcatgtactccctccggtctcaaatgtaagc |
16052724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 394 - 504
Target Start/End: Complemental strand, 16052643 - 16052533
Alignment:
| Q |
394 |
atgaagtatttatcgtgatccttgatgatactcatgctactgatgttttaaaggattttgttgaaggcaacctaattggcatgctttgttaaacaattgg |
493 |
Q |
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| T |
16052643 |
atgaagtatttattgtgatccttgatgatactcatgctaatgatgttttaaaggattttgttgaaggcaacctaattggcatgctttgttaaacaattgg |
16052544 |
T |
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| Q |
494 |
ttaggactatc |
504 |
Q |
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| T |
16052543 |
ttaggactatc |
16052533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 564 - 672
Target Start/End: Complemental strand, 16052471 - 16052366
Alignment:
| Q |
564 |
aatgaaagtctatgtgtgatttctccttggtcgtatagaaaaacgcatnnnnnnntgagataagaattaattagagtaaagtttgtagtagtatttcctt |
663 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||||||| ||| ||||||||||||| |
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| T |
16052471 |
aatgaaagtctatgtgtgatttcaccttggtcgtataggaaaacgcataaaaaaatgtgataagaattaattagagtaaaattt---gtagtatttcctt |
16052375 |
T |
|
| Q |
664 |
tttgcctca |
672 |
Q |
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||||||||| |
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| T |
16052374 |
tttgcctca |
16052366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 15936203 - 15936363
Alignment:
| Q |
48 |
ctcactaatgttggtttgcttgccattcttgataagtgcccttttcttaaatctcttgacattcgacgatgttattctttggaattaagtataagtttga |
147 |
Q |
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| T |
15936203 |
ctcactaatgatggtttgctcgccattcttgataaatggccttttcttgaatctcttgaccttcaaggatgtcgttatctcgaattgagtgaaagtttgg |
15936302 |
T |
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| Q |
148 |
agaaaaggtgcactgagcagatcaatcatttgcaactgccaaattcttatgactttgatga |
208 |
Q |
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| T |
15936303 |
aaaaaaggtgcattgatcgaatcaatcatttgcaactgccaattcgttatgactctgatga |
15936363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 260 - 338
Target Start/End: Original strand, 15936391 - 15936469
Alignment:
| Q |
260 |
ttggtactactgaatgttgtagtattggtgatgatgaaaaataaggtttttatattatacggtggatttcttgtcatgt |
338 |
Q |
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| T |
15936391 |
ttggtactagtgaatgttgtagtcttagtgatgatgaaaaataaagtttttatattatactgtgaatttcttgtcatgt |
15936469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 51 - 188
Target Start/End: Complemental strand, 36309212 - 36309075
Alignment:
| Q |
51 |
actaatgttggtttgcttgccattcttgataagtgcccttttcttaaatctcttgacattcgacgatgttattctttggaattaagtataagtttgaaga |
150 |
Q |
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|||||||||||||||| ||||||||||| |||||||||| | |||||||||||||||||||| ||||| ||| | | ||||| ||| ||||||||||| |
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| T |
36309212 |
actaatgttggtttgcatgccattcttgttaagtgccctctgcttaaatctcttgacattcgtcgatgacattatcttgaattgagtgaaagtttgaaga |
36309113 |
T |
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| Q |
151 |
aaaggtgcactgagcagatcaatcatttgcaactgcca |
188 |
Q |
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| T |
36309112 |
aaaggtgcattgatcagatcaatgatttgcaactgcca |
36309075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 36313364 - 36313269
Alignment:
| Q |
17 |
tctacgccatcttgatatcaagggagacagcctcactaatgttggtttgcttgccattcttgataagtgcccttttcttaaatctcttgacattcg |
112 |
Q |
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|||||||||||||||||| || ||| ||| |||||| | ||||| |||| |||||| ||||||| |||||| ||||| | |||||||||||||| |
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| T |
36313364 |
tctacgccatcttgatatgaaaggacacaagctcactgaacttggtgtgctcgccattattgataaatgccctcttcttgagtctcttgacattcg |
36313269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 36327486 - 36327440
Alignment:
| Q |
143 |
tttgaagaaaaggtgcactgagcagatcaatcatttgcaactgccaa |
189 |
Q |
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| T |
36327486 |
tttgaagaaaaggtgcattgaccagatcaaggatttgcaactgccaa |
36327440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 36336015 - 36335970
Alignment:
| Q |
143 |
tttgaagaaaaggtgcactgagcagatcaatcatttgcaactgcca |
188 |
Q |
| |
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||||||||||||||||| ||| |||||||| |||||||||||||| |
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| T |
36336015 |
tttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcca |
36335970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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