View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_low_21 (Length: 250)
Name: NF6188_low_21
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 24898859 - 24898624
Alignment:
| Q |
1 |
tttctctgtcgtaggttatgcctgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttg |
100 |
Q |
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| T |
24898859 |
tttctctgtcgtaggttatgcctgttgagacagtaactggatcattcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttg |
24898760 |
T |
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| Q |
101 |
attcattgtgtatgattgaagaagcagaaaaattatttggactttgaaatgttttagctttttggtggagagttgagaaaaagaatgaatgaatatgaga |
200 |
Q |
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| T |
24898759 |
attcattgtgtatgattcaagtagctgaaaaattgtttggacgttgaaatgcttttgctttttggtggagagttgagaaaaagaatgaatgaatatgaga |
24898660 |
T |
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| Q |
201 |
gaagggtggtggtattgttgttatttatagtgtatc |
236 |
Q |
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| T |
24898659 |
gaagggtggtggtattgttgttatttatagtgtatc |
24898624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24891108 - 24891344
Alignment:
| Q |
1 |
tttctctgtcgtaggttatgcctgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttg |
100 |
Q |
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| T |
24891108 |
tttctctgtcgtaggttatgcctgttgagacagtaactggatctttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttg |
24891207 |
T |
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| Q |
101 |
attcattgtgtatgattgaagaagcagaaaaattatttggactttgaaatgttttagctttttggtggagagttgagaaaaagaatgaatgaatatgaga |
200 |
Q |
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| T |
24891208 |
attcattgtgtatgattcaagtagctgaaaaattgtttggactttgaaatgttattgctttttggtggagagttgagaaaaagaatgaatgaatatgaga |
24891307 |
T |
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| Q |
201 |
gaagggtggtggtattgttgttatttatagtgtatctgtg |
240 |
Q |
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| T |
24891308 |
gaagggtggtggta---ttgttatttatagtgtatctgtg |
24891344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 24906318 - 24906139
Alignment:
| Q |
1 |
tttctctgtcgtaggttatgcctgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24906318 |
tttctctgtcgtaggttatgcctgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttg |
24906219 |
T |
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| Q |
101 |
attcattgtgtatgattgaagaagcagaaaaattatttggactttgaaatgttttagctttttggtggagagttgagaaa |
180 |
Q |
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| T |
24906218 |
attcattgtgtatgattcaagtagctgaaaaattgtttggactttgaaatgttattgctttttggtggagagttgagaaa |
24906139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43262565 - 43262515
Alignment:
| Q |
1 |
tttctctgtcgtaggttatgcctgttgagacagtaactggatccttcatga |
51 |
Q |
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| T |
43262565 |
tttctctatcgtaggttatacctgttgagactgttaccggatccttcatga |
43262515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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