View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6188_low_24 (Length: 248)

Name: NF6188_low_24
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6188_low_24
NF6188_low_24
[»] chr3 (3 HSPs)
chr3 (45-245)||(53534844-53535042)
chr3 (45-77)||(53533654-53533686)
chr3 (45-77)||(53536951-53536983)
[»] chr1 (3 HSPs)
chr1 (45-245)||(4753423-4753621)
chr1 (72-245)||(38202432-38202604)
chr1 (45-77)||(4756677-4756709)
[»] chr8 (2 HSPs)
chr8 (45-245)||(42915883-42916081)
chr8 (45-77)||(42919146-42919178)
[»] chr7 (3 HSPs)
chr7 (48-245)||(23252770-23252965)
chr7 (45-236)||(21944680-21944868)
chr7 (45-77)||(23255547-23255579)
[»] chr5 (4 HSPs)
chr5 (45-245)||(19598759-19598957)
chr5 (1-46)||(16052321-16052366)
chr5 (64-167)||(13951464-13951564)
chr5 (1-39)||(42564264-42564302)
[»] chr4 (3 HSPs)
chr4 (49-245)||(13096238-13096431)
chr4 (45-245)||(17382371-17382568)
chr4 (40-101)||(25063602-25063663)
[»] chr2 (1 HSPs)
chr2 (122-245)||(41543723-41543845)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 45 - 245
Target Start/End: Complemental strand, 53535042 - 53534844
Alignment:
Q  45 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 144  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  53535042 tactccctccgtcccacaatgtaagtcgctttgacacttttacgcatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgtgtt 53534946  T
Q  145 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctc 243  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  53534945 ttcctcttttacccttggcaacacaattactccaacttaattgccaccatcccacattcctccaactccaaggcaatgaattcatatggttccttctctc 53534846  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 53533686 - 53533654
Alignment:
Q  45 tactccctccgtcccacaatgtaagtcgctttg 77  Q
    |||||||||||||||||||||||||||||||||    
T  53533686 tactccctccgtcccacaatgtaagtcgctttg 53533654  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 53536983 - 53536951
Alignment:
Q  45 tactccctccgtcccacaatgtaagtcgctttg 77  Q
    ||||||||||||||||||| |||||||||||||    
T  53536983 tactccctccgtcccacaaggtaagtcgctttg 53536951  T

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Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 45 - 245
Target Start/End: Original strand, 4753423 - 4753621
Alignment:
Q  45 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 144  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  4753423 tactccctccgtcccacaatgtaagtcgctttgacacttttacgtatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgtgtt 4753519  T
Q  145 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctc 243  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  4753520 ttcctcttttacccttggcaacacaattactccaacttaattgccaccatcccacattcctccaactccaaggcaatgaattcatatgattccttctctc 4753619  T

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Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 72 - 245
Target Start/End: Complemental strand, 38202604 - 38202432
Alignment:
Q  72 gctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtttt-cctcttttacctttggcaacacaa 170  Q
    ||||||||| |||||| ||||||||||||||   ||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  38202604 gctttgacacttttacacatattaagaaata---tttaacttttgtgaactttgttaaaattagatatgtttttttcctcttttacccttggcaacacaa 38202508  T
Q  171 ttactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctctc 245  Q
    |||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||    
T  38202507 ttactccaacttgattgccaccgtcccaaattcctccaactccaaggcaatgaattcacacggttccttctctctc 38202432  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 4756709 - 4756677
Alignment:
Q  45 tactccctccgtcccacaatgtaagtcgctttg 77  Q
    |||||||||||||||||||||||||||||||||    
T  4756709 tactccctccgtcccacaatgtaagtcgctttg 4756677  T

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Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 45 - 245
Target Start/End: Original strand, 42915883 - 42916081
Alignment:
Q  45 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 144  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||    
T  42915883 tactccctccgtcccacaatgtaagtcgctttgacacttttacgcatattaagaaata---tttaacttttatgaactttgttaaaattaaatatgtgtt 42915979  T
Q  145 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctc 243  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  42915980 ttcctcttttacccttggcaacacaattactccaacttaattgccaccgtcccacattcctccaactccaaggcaatgaattcatatgattccttctctc 42916079  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 42919178 - 42919146
Alignment:
Q  45 tactccctccgtcccacaatgtaagtcgctttg 77  Q
    |||||||||||||||||||| ||||||||||||    
T  42919178 tactccctccgtcccacaatataagtcgctttg 42919146  T

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Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 48 - 245
Target Start/End: Original strand, 23252770 - 23252965
Alignment:
Q  48 tccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttc 147  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||    
T  23252770 tccctccgtcccacaatgtaagtcgctttgacattttttcgcatattaagaaata---tttaacttttatgaactttgttaaaattaaatatgtgttttc 23252866  T
Q  148 ctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctctc 245  Q
    |||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||| || ||||||||||    
T  23252867 ctcttttacccttggcaacacaattactccaacttaattgccaccgtcccacattcctccaactccaaggcaatgaattcatatgattccttctctctc 23252965  T

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Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 21944680 - 21944868
Alignment:
Q  45 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 144  Q
    |||||| ||||| ||| | |||| || |||||| || ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||    
T  21944680 tactccttccgttccaaattgtacgttgctttggcacttttacgcatattaagaaatc---tttaacttttgtgaactttgttaaaattaaatatgtttt 21944776  T
Q  145 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 236  Q
    ||||||||||| | |||||||||||||||||||||||| |||| |||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  21944777 ttcctcttttatccttggcaacacaattactccaacttgattgtcaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 21944868  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 23255579 - 23255547
Alignment:
Q  45 tactccctccgtcccacaatgtaagtcgctttg 77  Q
    |||||||||||||||||||||||||||||||||    
T  23255579 tactccctccgtcccacaatgtaagtcgctttg 23255547  T

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Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 45 - 245
Target Start/End: Original strand, 19598759 - 19598957
Alignment:
Q  45 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 144  Q
    |||||||||||||||| | | || | ||||||| || || |||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||    
T  19598759 tactccctccgtcccaaattatatgccgctttggcacttctacgcatattaagaaatc---tttaacttttgtgaactttgttaaaattaaatatgtttt 19598855  T
Q  145 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctc 243  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||  ||||| ||||||| ||||||||||||||||||||||| |||| ||||||||    
T  19598856 ttcctcttttacccttggcaacacaattactccaacttgattgccaccgtcccaaattcctcaaactccaaggcaatgaattcacacggttccttctctc 19598955  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16052366 - 16052321
Alignment:
Q  1 aattatgcagtaatcacccacttattgcttgtattagcttatacta 46  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  16052366 aattatgcagtaatcaaccacttattgcttgtattagcttatacta 16052321  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 13951464 - 13951564
Alignment:
Q  64 tgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttcctcttttacctttggc 163  Q
    |||| |||||||||||| ||||||| ||||||||||||    | |||||||||| |||||||| |||| ||||||| | ||| ||||||||||| ||| |    
T  13951464 tgtatgtcgctttgacacttttacgtatattaagaaatc---tctaacttttgtaaactttgtcaaaagtaaatatatttttccctcttttacccttgac 13951560  T
Q  164 aaca 167  Q
    ||||    
T  13951561 aaca 13951564  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 42564302 - 42564264
Alignment:
Q  1 aattatgcagtaatcacccacttattgcttgtattagct 39  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  42564302 aattatgcagtaatcaccaatttattgcttgtattagct 42564264  T

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Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 13096431 - 13096238
Alignment:
Q  49 ccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttcc 148  Q
    |||||||||||| | |||| |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||    
T  13096431 ccctccgtcccaaattgtatgtcgctttgacacttttacgcatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgttttttcc 13096335  T
Q  149 tcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctctc 245  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||  | ||| ||||||||||||| |||| | |||||||||| |||| ||||||||||    
T  13096334 tcttttacccttggcaacacaattaccccaacttgattgccaccgt-ccaaattcctccaactctaaggaattgaattcacacggttccttctctctc 13096238  T

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Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 45 - 245
Target Start/End: Complemental strand, 17382568 - 17382371
Alignment:
Q  45 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 144  Q
    |||||||||||| ||| | |||| ||||||||| || |||||| |||||||||||||    ||||||||||||||||||||||||||||| |||||| ||    
T  17382568 tactccctccgttccaaattgtacgtcgctttggcacttttacacatattaagaaatc---tttaacttttgtgaactttgttaaaattagatatgt-tt 17382473  T
Q  145 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctc 243  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  17382472 ttcctcttttacccttggcaacacaattattccaacttgattgccaccgtcccaaattcctccaactccaaggcaatgaattcacacggttccttctctc 17382373  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 25063602 - 25063663
Alignment:
Q  40 tatactactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaat 101  Q
    ||||||||||||||||||||| | |||||| || |||| || ||| || |||||||||||||    
T  25063602 tatactactccctccgtcccaaattgtaagacgttttggcaatttcacacatattaagaaat 25063663  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 245
Target Start/End: Original strand, 41543723 - 41543845
Alignment:
Q  122 tttgttaaaattaaatatgtgttttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaat 221  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||  ||||| ||||||||||||||||||||||    
T  41543723 tttgtgaaaattaaatatgt-ttttcctcttttacccttggcaacacaattactccaacttgattg-caccgtcccaaattcctccaactccaaggcaat 41543820  T
Q  222 gaattcacatggtt-cttctctctc 245  Q
    ||||||||| |||| ||||||||||    
T  41543821 gaattcacacggttccttctctctc 41543845  T

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