View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6188_low_25 (Length: 243)
Name: NF6188_low_25
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 11850672 - 11850882
Alignment:
| Q |
12 |
cataggaaagtaaaattcatattaaaatcacatacaatgtttatgttaaacattagtacttattaacagttaaatatcttgtaagcatattacaaaactg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11850672 |
cataggaaagtaaaattcatattaaaatcacatacaatgtttatgttaaacattagtacttattaacagttaaatatcttgtaagcatatttgaaaactg |
11850771 |
T |
|
| Q |
112 |
gcttnnnnnnntcaatacaagacaaaagaagagcaaaggttttctcttgtagacaaattatctttttgcatgttaatatttaataactaaaaagtaatgg |
211 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11850772 |
gcttaaaaaaatcaatacaagacaaaagaagagcaaaggttttctcttgtagacaaattatctttttgcatgttaatatttaataactaaaaagtaatgg |
11850871 |
T |
|
| Q |
212 |
ttagtgttcaa |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
11850872 |
ttagtgttcaa |
11850882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 29072498 - 29072290
Alignment:
| Q |
12 |
cataggaaagtaaaattcatattaaaatcacatacaatgtttatgttaaacattagtacttattaacagttaaatatcttgtaagcatattacaaaactg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29072498 |
cataggaaagtaaaattcatattaaaatca--tacaatgtttatgttaaacattagtacttattaacagttaaatatcttgtaagcatattacaaaactg |
29072401 |
T |
|
| Q |
112 |
gcttnnnnnnntcaatacaagacaaaagaagagcaaaggttttctcttgtagacaaattatctttttgcatgttaatatttaataactaaaaagtaatgg |
211 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29072400 |
gcttaaaaaaatcaatacaagacaaaagaagagcaaaggttttctcttgtagacaaattatctttttgcatgttaatatttaataactaaaaagtaatgg |
29072301 |
T |
|
| Q |
212 |
ttagtgttcaa |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
29072300 |
ttagtgttcaa |
29072290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 3618337 - 3618260
Alignment:
| Q |
19 |
aagtaaaattcatattaaaatcacatacaatgtttatgttaaacattagtacttattaacagttaaatatcttgtaagcat |
99 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||| || ||| | |||| ||| ||||||||| |||| |
|
|
| T |
3618337 |
aagtaaaattcctattaaaatca--tacaatgtttatgttaaacattaataattact-acaggtaagtatcttgtatgcat |
3618260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University