View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_low_29 (Length: 238)
Name: NF6188_low_29
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 7236774 - 7236998
Alignment:
| Q |
1 |
actttacttggagctcaaaacttttgaggagaatcaagcaaaggaagagaatgttaccttgcctcagtatgatgataaagatgaccctaaattattcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7236774 |
actttacttggagctcaaaacttttgaggagaatcaagcaaaggaagagaatgttaccttgcctcagtatgatgataaagatgaccctaaattattcaat |
7236873 |
T |
|
| Q |
101 |
caaagagttgtacaattttcaaagttattgaataaagattcactagagaagttgcattatttgcatgcagtcataactgagacactaagattgtatcctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7236874 |
caaagagttgtacaattttcaaagttattgaataaagattcactagagaagttgcattatttgcatgcagtcataactgagacactaagattgtatcctg |
7236973 |
T |
|
| Q |
201 |
cggttcctcaggtatgcattttttg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
7236974 |
cggttcctcaggtatgcattttttg |
7236998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 49591249 - 49591025
Alignment:
| Q |
1 |
actttacttggagctcaaaacttttgaggagaatcaagcaaaggaagagaatgttaccttgcctcagtatgatgataaagatgaccctaaattattcaat |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| | |||| |||||| |
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| T |
49591249 |
actttactcagagctcaaaacttttgaggagaatcaagcaaaggaagagaatgttacattgcctcaatgtgatgataaagatgaccttgaattgttcaat |
49591150 |
T |
|
| Q |
101 |
caaagagttgtacaattttcaaagttattgaataaagattcactagagaagttgcattatttgcatgcagtcataactgagacactaagattgtatcctg |
200 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
49591149 |
caaagggtagtacaattttcaaagttattgaataaagattcactagagaagttgcattatttgcatgcagtcataactgagactctaagattgtatccgg |
49591050 |
T |
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| Q |
201 |
cggttcctcaggtatgcattttttg |
225 |
Q |
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| ||||||||||||||||||||||| |
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| T |
49591049 |
cagttcctcaggtatgcattttttg |
49591025 |
T |
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