View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_low_30 (Length: 238)
Name: NF6188_low_30
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24906582 - 24906802
Alignment:
| Q |
1 |
ctcaaaacaattgcctctgagagcgaaaccaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaacaacactg |
100 |
Q |
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| T |
24906582 |
ctcaaaacaattgcctctgagagcgaaacaaatagacggtgtatcgaatcggctggcgctgtcgagtttttagcatcaatagtaacacaaaacaacacaa |
24906681 |
T |
|
| Q |
101 |
gttgttcatcttcatgttcaacaacggaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaaga |
200 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24906682 |
gttgttcatcttcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaaga |
24906781 |
T |
|
| Q |
201 |
tgaagctatcaacatccttta |
221 |
Q |
| |
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||||||||| ||||||||||| |
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| T |
24906782 |
tgaagctataaacatccttta |
24906802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24899123 - 24899343
Alignment:
| Q |
1 |
ctcaaaacaattgcctctgagagcgaaaccaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaacaacactg |
100 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||| |
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| T |
24899123 |
ctcaaaacaattgcttctgagagcgaaacaaatagacggtgtatcgaatcggctggcgctgtcgagtttttagcatcaatagtaacacaaaacaacacaa |
24899222 |
T |
|
| Q |
101 |
gttgttcatcttcatgttcaacaacggaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaaga |
200 |
Q |
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| T |
24899223 |
gttgttcatcttcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaaga |
24899322 |
T |
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| Q |
201 |
tgaagctatcaacatccttta |
221 |
Q |
| |
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||||||||| ||||||||||| |
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| T |
24899323 |
tgaagctataaacatccttta |
24899343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 24890844 - 24890624
Alignment:
| Q |
1 |
ctcaaaacaattgcctctgagagcgaaaccaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaacaacactg |
100 |
Q |
| |
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|||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||| |
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| T |
24890844 |
ctcaaaacaattgcatccgagagcgaaacaaatagacggtgtatcgaatcggcaggcgctgtcgagtttttagcatcaatagtaacacaaaacaacacaa |
24890745 |
T |
|
| Q |
101 |
gttgttcatcttcatgttcaacaacggaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaaga |
200 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24890744 |
gttgttcatcttcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaaga |
24890645 |
T |
|
| Q |
201 |
tgaagctatcaacatccttta |
221 |
Q |
| |
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||||||||| ||||||||||| |
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| T |
24890644 |
tgaagctataaacatccttta |
24890624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 5284950 - 5285019
Alignment:
| Q |
151 |
gatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaagctatcaacatccttta |
221 |
Q |
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| T |
5284950 |
gatgatgacgttgaag-ttttgcttttgagttcaaaataggtgcagaggatgaagctatagacatccttta |
5285019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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