View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_low_4 (Length: 507)
Name: NF6188_low_4
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 493
Target Start/End: Complemental strand, 5331722 - 5331248
Alignment:
| Q |
17 |
actttttgtaaatctccaatccgaatggcatcacgagggcaattgtgtggactgtagctgtagtttggtggccctgagaaagggttacaaattttcacga |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331722 |
acttttggtaaatctccaatccgaatggcatcacgagggcaattgtgtggactgtagctgtagtttggtggccctgagaaagggttacaaattttcacga |
5331623 |
T |
|
| Q |
117 |
gtccaattaattcttcattttcttcacctattcctagcagctgatacatgagtgatacgtcagaattcaactgagacacaaacaaaccattatatcagaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331622 |
gtccaattaattcttcattttcttcacctattcctagcagctgatacatgagtgatacgtcagaattcaactgagacacaaacaaaccattatatcagaa |
5331523 |
T |
|
| Q |
217 |
actatcaaacaattgtatgcatttccttttgaataggtgaatgacnnnnnnnnnnnttgtacctcaacaatgaaagtgtggattgtgctgccaatttgag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331522 |
actatcaaacaattgtatgcatttccttttgaataggtgaatgac--aaaaaaaaattgtacctcaacaatgaaagtgtggattgtgctgccaatttgag |
5331425 |
T |
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| Q |
317 |
ctatcaattttccagagaatgagtcattaatgcatggtaacatcgaacccaaactactgttctgtgggttgttctcaaagtcctcaaatgcagagcatgc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331424 |
ctatcaattttccagagaatgagtcattaatgcatggtaacatcgaacccaaactactgttctgtgggttgttctcaaagtcctcaaatgcagagcatgc |
5331325 |
T |
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| Q |
417 |
atcatttgcaaaactgcattcacaatgaaaagagagtttgatcactacaatctcagttacgaatactctcttcggtc |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5331324 |
atcatttgcaaaactgcattcacaatgaaaagagagtttgattactacaatctcagttacgaatactctcttcggtc |
5331248 |
T |
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