View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_low_5 (Length: 419)
Name: NF6188_low_5
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 32283106 - 32283501
Alignment:
| Q |
18 |
aaaaataacataaatgtagttacaactgttcaaggttaaatgtcatttt-gttgggaccacggttcaccattcggacaataattctatgtctaggttttg |
116 |
Q |
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| T |
32283106 |
aaaaataacataaatgtagttacaacattacaaggttaaatgtcatttttgttgggaccacggttcaccattcggacaataattctatgtctaggttttg |
32283205 |
T |
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| Q |
117 |
tagttttcacgtaaaaggtaatgaatttatgtgtatcatattatgctatcttcttatggtcaatatcttgcatcagtcgcatttttactcgttttccacg |
216 |
Q |
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| T |
32283206 |
tagttttcacgtaaaaagtaatgaatttatgtgtatcatattatgctatcttcttatggtcaatatcttgcatcagtcgcatttttactcgttttccacg |
32283305 |
T |
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| Q |
217 |
ttataaagatcttcaaggtaactgcaacaacaatttaaaataaaaatgggtgcattgtgtaatcgaggggaccattgcatggctatataggaaatgcatt |
316 |
Q |
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| T |
32283306 |
ttataaagatcttcaaggtaactgcaacaacaatttaaaataaaaaagggtgcattgtgtaatcgcgggggccattgcatggctatataggaaatgcatt |
32283405 |
T |
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| Q |
317 |
acttcttacatcatgcatcaagaagaaagaagcaaaagcatctttttgcgaattttccatttgtcgaatacataatgaaacatttgatattcttgg |
412 |
Q |
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| T |
32283406 |
acttcttacatcatgcatcaagaagaaagaagcaaaagcatctctttgcgaattttccatttgtcgaatacataatgaaacatttgatattattgg |
32283501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 359
Target Start/End: Complemental strand, 25785891 - 25785800
Alignment:
| Q |
272 |
tgtgtaatcgaggggaccatt-gcatggctatataggaaatgcattacttcttacatcat---gcatcaagaagaaagaagcaaaagcatct |
359 |
Q |
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||||||| |||||||||| || ||||||||| | ||||| ||||||||||| |||||||| |||||||||||||||||| |||||||||| |
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| T |
25785891 |
tgtgtaaacgaggggaccgtttgcatggctacagaggaagtgcattacttcatacatcatcaagcatcaagaagaaagaagaaaaagcatct |
25785800 |
T |
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