View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6188_low_7 (Length: 388)
Name: NF6188_low_7
Description: NF6188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6188_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 277 - 372
Target Start/End: Original strand, 7152429 - 7152524
Alignment:
| Q |
277 |
atcagtaaagttctcttcctcccgtaccaaaaacaccttcaatatattaggagaaagaaaaacactttagacaacgataaacatatataactattt |
372 |
Q |
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| T |
7152429 |
atcagtaaagttctcttcctcccgtaccaaaaacaccttcaatatattaggagaaagaaaaacactttagacaacgataaacatatataactattt |
7152524 |
T |
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Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 7152280 - 7152365
Alignment:
| Q |
12 |
atgaaggaatatgggaaagcattggtagaagctaacaaattcgaccattggatcaaaacggcatccacttgagaatcaccaggtct |
97 |
Q |
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| T |
7152280 |
atgaaggaatctgggaaagcattggtagaagctaacaaattcgaccattggatcaaaacggcatccacttgagaatcaccaggtct |
7152365 |
T |
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