View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6189_high_10 (Length: 307)

Name: NF6189_high_10
Description: NF6189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6189_high_10
NF6189_high_10
[»] chr2 (12 HSPs)
chr2 (1-295)||(8403696-8403990)
chr2 (170-295)||(8429551-8429676)
chr2 (135-214)||(8368104-8368183)
chr2 (135-214)||(8401227-8401306)
chr2 (135-214)||(8422804-8422883)
chr2 (146-200)||(8411867-8411921)
chr2 (146-200)||(8433965-8434019)
chr2 (148-200)||(8376087-8376139)
chr2 (148-200)||(8431018-8431070)
chr2 (132-191)||(8459649-8459708)
chr2 (147-196)||(8416952-8417001)
chr2 (150-200)||(8405747-8405797)
[»] chr4 (2 HSPs)
chr4 (155-287)||(55336019-55336151)
chr4 (154-241)||(55330633-55330720)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 8403990 - 8403696
Alignment:
Q  1 tagggaatattgcatcaaagattaacaagggtttagcaatttttggacctttgttaacaggaattgcagctataggatcatcatttgtaggtgatgaaat 100  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8403990 tagggaatattgcattaaagattaacaagagtttagcaattttaggacctttgttaacaggaattgcagctatagggtcatcatttgtaggtgatgaaat 8403891  T
Q  101 gttggtaaattttgttcctgctttttccggtgctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403890 gttggtaaattttgttcctgctttttccggtgctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 8403791  T
Q  201 aactgtggtggattttttgagcttttggaagagacagttgaacagactattgaagagaaagatttgaataaaagagaaaatggtgaggtgtttga 295  Q
    |||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8403790 aactgtggtggattttttgagcttttggaagagacagttgaagaaattattgaagagaaagatttgaataaaagagaaaatgatgaggtgtttga 8403696  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 170 - 295
Target Start/End: Complemental strand, 8429676 - 8429551
Alignment:
Q  170 acaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacagactattgaagagaaagatttgaat 269  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||||    
T  8429676 acaagttggtatgatgtttcagatgtatagaaactgtagtggattttttgagcttttggaagagacggttgaagaaactattgaagataaagatttgaat 8429577  T
Q  270 aaaagagaaaatggtgaggtgtttga 295  Q
    ||||||||||| || || ||||||||    
T  8429576 aaaagagaaaacggggaagtgtttga 8429551  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 8368183 - 8368104
Alignment:
Q  135 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 214  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8368183 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8368104  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 8401227 - 8401306
Alignment:
Q  135 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 214  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8401227 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8401306  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 8422804 - 8422883
Alignment:
Q  135 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 214  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8422804 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8422883  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 8411921 - 8411867
Alignment:
Q  146 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 200  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8411921 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8411867  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 8434019 - 8433965
Alignment:
Q  146 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 200  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8434019 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8433965  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 8376087 - 8376139
Alignment:
Q  148 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 200  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8376087 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8376139  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 8431070 - 8431018
Alignment:
Q  148 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 200  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8431070 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 8459649 - 8459708
Alignment:
Q  132 gctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgag 191  Q
    |||||||||||||||||||| || || || |||||||| |||||||||||||| ||||||    
T  8459649 gctttggcaactgttgttaacacattagaacatggagggcaagttggtatggtttttgag 8459708  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 8417001 - 8416952
Alignment:
Q  147 gttaatacttttgagcatggaggacaagttggtatggtgtttgagatgta 196  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  8417001 gttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta 8416952  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 8405797 - 8405747
Alignment:
Q  150 aatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 200  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||    
T  8405797 aatacttttgaacatggtggacaagttggcatggtttttgaaatgtataga 8405747  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 287
Target Start/End: Complemental strand, 55336151 - 55336019
Alignment:
Q  155 ttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacagactattgaa 254  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || | || | |||||   |||||   ||  ||||     
T  55336151 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattttttaagatgtttggagagagtattgaaagcacacttgag 55336052  T
Q  255 gagaaagatttgaataaaagagaaaatggtgag 287  Q
    |||||||||||| | ||||||||||||||||||    
T  55336051 gagaaagatttggaaaaaagagaaaatggtgag 55336019  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 55330720 - 55330633
Alignment:
Q  154 cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttga 241  Q
    ||||||| ||||| |||||| |||||||||| ||||| ||||||||||| |||||||||||  || |||| ||||||||||| |||||    
T  55330720 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttga 55330633  T

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