View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6189_high_4 (Length: 458)
Name: NF6189_high_4
Description: NF6189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6189_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 157 - 440
Target Start/End: Complemental strand, 32526134 - 32525852
Alignment:
| Q |
157 |
tattgtgatattttgttgacataatgttgtgaattaatgtgacaattgattagattatccttattgattgttatttgattttatgtggtattattagatg |
256 |
Q |
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| T |
32526134 |
tattgtgatattttgttgacataatgttgtgaattaatgtgacaattgattggattatccttattgattgttatttgattttatgtggtattgttagatg |
32526035 |
T |
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| Q |
257 |
ttttacgtaatatctcatttattttatactaatacatgtttatgaaattctccc-ctttgttgtgtttatgattgtttggctcgcccatatgtttgtgaa |
355 |
Q |
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| T |
32526034 |
ttttacgtaatatctcatttattttatactaatacatgtttatgaaattctccctctttgttgtgtttatgattgtttggctcgcccatatgtttgtgaa |
32525935 |
T |
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| Q |
356 |
attgcagtagatacatgttctttagtcttggagtttaagtttagtgacaatttgggagaatgagttatagagtcatgtactccgt |
440 |
Q |
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| T |
32525934 |
attgcagtagatacatgttctttagtcttggagtttaagtttagtgataatttgg--gaatgagttatagagtcatgtactccgt |
32525852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 153 - 278
Target Start/End: Complemental strand, 32521183 - 32521057
Alignment:
| Q |
153 |
ataatattgtgatattttgttgacataatgttgtgaattaatgtgacaattgattagattatccttattgattgttatttgattttatgtggtattatta |
252 |
Q |
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| T |
32521183 |
ataatattgtgatattttgttgacataatgttgtgaattaacgtgacaattgattggattatccttatcgattgtgatttgattttatgtggtattgtta |
32521084 |
T |
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| Q |
253 |
gatg-ttttacgtaatatctcatttat |
278 |
Q |
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| T |
32521083 |
gaggtttttacgtattatcttatttat |
32521057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 32526207 - 32526141
Alignment:
| Q |
14 |
atataagcaatcatgaacaaagtcgatgaacttaaagaggaattataggtagaaattaattaaagaa |
80 |
Q |
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| T |
32526207 |
atatatgcaatcatgaacaaagtcgatgaactcaaagaggaattataggtagaaattaattaaagaa |
32526141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 32521310 - 32521249
Alignment:
| Q |
13 |
aatataagcaatcatgaacaaagtcgatgaacttaaagaggaattataggtagaaattaatt |
74 |
Q |
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| T |
32521310 |
aatataagcaatcatgaacaaagttgatgaactcaaagaggaattatgggtagaaattaatt |
32521249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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