View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6189_high_6 (Length: 417)
Name: NF6189_high_6
Description: NF6189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6189_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 23 - 406
Target Start/End: Complemental strand, 24230917 - 24230535
Alignment:
| Q |
23 |
cccaaatcattttccagcagatgcaccaaacaaacagttattttgaagttttccactctctaggtctcgggttcgaatctaggtgccaacaattcctctg |
122 |
Q |
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| T |
24230917 |
cccaaatcattttccagcagatgcaccaaacaaacagttattttgaagttttccattctctaggtctcgggttcgaatctaggtgc-aacaattcctctg |
24230819 |
T |
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| Q |
123 |
ttgggccagtctatatagagctttgctccggcttcaattgagccctcgctagtggacagcgcgattggttcctcagattagtcaatccttgcaccggata |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24230818 |
ttgggccagtctatatagagctttgctccggcttcaattgagccctcgctagtggacagcgcgattggttccccagattagtcaatccttgcaccggata |
24230719 |
T |
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| Q |
223 |
caaacttttaaaaaataaagtattgaagctttccagaggacacaaattgtattgcctcagtgttgttcaaagtgaattaaacatccagagacaaaaaatc |
322 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24230718 |
caaacttataaaaaataaagtattgaagctttccagaggacacaaattgtattgcctcagtgttgttcaaagtgaattaaacatccagagacaaaaaatc |
24230619 |
T |
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| Q |
323 |
aaacagcttcaaagcaaggagaagctactgtgcaatgcaaattgcaaccaaaatagaaacaaactttatactcacccacttcat |
406 |
Q |
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| T |
24230618 |
aaacagcttcaaagcaaggagaagctactgtgcaatgcaaattgcaaccaaaatagaaacaaactttatactcacccacttcat |
24230535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 10857551 - 10857659
Alignment:
| Q |
105 |
gtgccaacaattcctctgttgggccagtctatatagagctttgctccggcttcaattga-gccctcgctagtggacagcgcgattggttcctcagattag |
203 |
Q |
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| T |
10857551 |
gtgccaacagttcctgtgtagg-ccagtctatatagagctttgctctgacttcaattgaggctcccgctagtggacagagggattggtcccccaaatcag |
10857649 |
T |
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| Q |
204 |
tcaatccttg |
213 |
Q |
| |
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|| ||||||| |
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| T |
10857650 |
tcgatccttg |
10857659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 11977655 - 11977706
Alignment:
| Q |
128 |
ccagtctatatagagctttgctccggcttcaattgagccctcgctagtggac |
179 |
Q |
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| T |
11977655 |
ccagtccatatagggctttgctctggcttcaattgagtccccgctagtggac |
11977706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 28252134 - 28252024
Alignment:
| Q |
103 |
aggtgccaacaattcctctgttgggccagtctatatagagctttgctccggcttcaattgagccctcgctagtggacagcgcgattggttcctcagatta |
202 |
Q |
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|||||| || |||| || |||||||||||| ||| | ||| ||||| |||||||||||| ||| |||||||||| | | |||||||||| | ||||| |
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| T |
28252134 |
aggtgctaaaaatttctgtgttgggccagttcatacaaggctctgctctggcttcaattgaacccccgctagtggatggtgggattggttccccggatta |
28252035 |
T |
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| Q |
203 |
gtcaatccttg |
213 |
Q |
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|||| |||||| |
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| T |
28252034 |
gtcagtccttg |
28252024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 32071506 - 32071556
Alignment:
| Q |
143 |
ctttgctccggcttcaattgagccctcgctagtggacagcgcgattggttc |
193 |
Q |
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|||||||| | |||||||||||||| | ||||||||||||| ||||||||| |
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| T |
32071506 |
ctttgctctgacttcaattgagcccccactagtggacagcgagattggttc |
32071556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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